SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma18g29160): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma18g29160): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma18g29160

Feature Type:gene_model
Chromosome:Gm18
Start:33476674
stop:33478013
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g29160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G09300AT Annotation by Michelle Graham. TAIR10: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr5:2884282-2886291 REVERSE LENGTH=401 SoyBaseE_val: 5.00E-86ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003863GO-mf Annotation by Michelle Graham. GO Molecular Function: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity SoyBaseN/AISS
GO:0016624GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor SoyBaseN/AISS
PTHR11516Panther PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR) JGI ISS
PTHR11516:SF1Panther BRANCHED CHAIN KETO ACID DEHYDROGENASE JGI ISS
PF00676PFAM Dehydrogenase E1 component JGI ISS
UniRef100_G7JBL9UniRef Annotation by Michelle Graham. Most informative UniRef hit: 2-oxoisovalerate dehydrogenase subunit alpha n=1 Tax=Medicago truncatula RepID=G7JBL9_MEDTR SoyBaseE_val: 5.00E-101ISS
UniRef100_I1N1U3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1U3_SOYBN SoyBaseE_val: 4.00E-145ISS

Expression Patterns of Glyma18g29160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g29160 not represented in the dataset
Glyma18g29160 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g29160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g148300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g29160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g29160
>Glyma18g29160.2   sequence type=CDS   gene model=Glyma18g29160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCAATGGGGTGTAGCAAGAAAATGCTCAGATGCCAATAAATATGATAATGTGAAAGGAAGGCAGATGCTAACTCATTATAGGCCCAAAAAGCACAATTACTTTACAGTAGCATCAACTATTGCTACACAAATTTCCCATGTTGTTGGAGCTACTTATTCCTTAAAGATGGATAAAAAGGATGCATGTGTTGTCACTTACTTTGGTGATGGTGGCTCAAGGACATTTCCATGTTGCCTTAAATTTTCAGCAGTTTTGGAGGCCCCAGTTATTTTTATATGTTGGAACAATGGATGGGCTATCAGCACACCCATTTCAGATCAGTTTCCAAGGAAAGCATATGGAGTCCGTAGCATTCGTGATGGCAATGATGCCCTAGATATCTATAGTGCTATTCAAGCTGCTCATCAAATGGCAATTACTGAAGAGAGACCAATTCTAATAGAAGCTCTTACATATAGAGTGGGACACCACACCGCATCAGATGACTCTACCAAGTATCATCCCGTGAATGAGATTAAATGGTGGAGATTGACACGTGATCCTATGGCTAGATTTAGAAAGTGGATAGAAAAGAATGGTTGGTGGAATGATATGGCTGAGTCATAA
Predicted protein sequences of Glyma18g29160
>Glyma18g29160.2   sequence type=predicted peptide   gene model=Glyma18g29160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWQWGVARKCSDANKYDNVKGRQMLTHYRPKKHNYFTVASTIATQISHVVGATYSLKMDKKDACVVTYFGDGGSRTFPCCLKFSAVLEAPVIFICWNNGWAISTPISDQFPRKAYGVRSIRDGNDALDIYSAIQAAHQMAITEERPILIEALTYRVGHHTASDDSTKYHPVNEIKWWRLTRDPMARFRKWIEKNGWWNDMAES*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo