SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G54150 | AT | Annotation by Michelle Graham. TAIR10: E3 Ubiquitin ligase family protein | chr1:20215480-20217303 FORWARD LENGTH=383 | SoyBase | E_val: 8.00E-139 | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| KOG1571 | KOG | Predicted E3 ubiquitin ligase | JGI | ISS | |
| PTHR12183 | Panther | UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN | JGI | ISS | |
| PF12483 | PFAM | E3 Ubiquitin ligase | JGI | ISS | |
| UniRef100_Q4VYC9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Baculoviral IAP repeat-containing protein n=1 Tax=Medicago truncatula RepID=Q4VYC9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EB37 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EB37 related cluster n=1 Tax=unknown RepID=UPI000233EB37 | SoyBase | E_val: 0 | ISS |
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Glyma18g27930 not represented in the dataset |
Glyma18g27930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g149800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g27930.2 sequence type=transcript gene model=Glyma18g27930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGCAAATAATTTGATATAACTAAGAAAAATAATTCTTTAGTTAATTACAAAGTTAACGTATAATATATATATTTTTTAATTGAGAGAAGCTTAACACCCGGTCGGTTCTTCTACGGTGGTAGTTCTAGAACAAACTAAACGACGACCGACGTGGTGGATTGTGGTCTGTGGAAACGCAAACAGCATTTGCTATGAGAATGAGCAATGAATGAATGATCAATGTCTCATCAGGAGCAAGCCTTAGTGTCCCTTCTCTCTCAGCTCGCCCTTTCCTTGGATGGTGCCGTTTTGGGCTTCGCCTTGGCCTACGCCGCCGTCCGCACCCTCTTCAAATTCACCGCCACCTCCTCCGCCCTCCGCAAGCTCCGCCGCGCCCCCTCCCTCTCTGTCTCCGACCTCCGATCCCTCCTCGCCGAGATACCCTCCGACGGCGACGGAAACTCCAAGGGTGGCATAATCGTAATTGTCCGCGGCACCGTCGACGCCAAGTCAGCCGTCGATGGCACCTGGAAAACCCTGAGACCTGGTGTCTTGGTTTCTCGCGAGTCCGGCGATAAAGGCGTTATTCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTCTTCTAACTGATGTTGGACGGCGGCCAAATGCTGAGTATGTTGTTGTAAACATGGATGGCTCAAGACATCCTTTACCTTTGACAACAGTCTATCATAAATTGCAACCAATAACTGCTTCTCCTTATACTTTTTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCATTGGGGAAGGATATCACTGCTGTTGGCCTTTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCGTGCAAATATCTACCATATTTTCTGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCTCAGATGGATGATGAGATTGAAGATGCTCCAGATGGACAATTATGTGTTATATGTCTAATGAGGAGAAGGCGTTCTGTCTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGTGAAGTGGCACCCAAATGTCCCGTTTGTCGTCAGGAGATCCGAGATTCAGTGCGGATTTATGAATCTTGAACAGACAGGCTGATTGTTCTGTTCTCTCTGCGGCAGAATCTTTTATGCTTTGCTAATGAGAAGAATGTTGTTTGCTTTTTATTTCGATAAGATATGGAATGTGTAGTTGTAGGGAAAACTTGCCTTTGCTCTTATTTCCTGTGAACATTCATCTGGGGTAGATAATAGGTTGTCGAGGTTAATTCGAAGCCTCCTCACTTCTCACTCTGCCAGGTCTTTTGGGGAACCTTATACGCTTATAGGATTTCCAGTTATCCCATTTAGTGTACATAAATATTTAATATTGCAAAAGTCCTATAGAATGAACTCTGGTATGTTATTGTGCATGTGATGTTACTTGTAGACTATAAATCTTGTGTTATACCCGGCTTTAAAGGTAATCTCACGAGTACACTTGTAAATCTAA
>Glyma18g27930.1 sequence type=CDS gene model=Glyma18g27930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCATCAGGAGCAAGCCTTAGTGTCCCTTCTCTCTCAGCTCGCCCTTTCCTTGGATGGTGCCGTTTTGGGCTTCGCCTTGGCCTACGCCGCCGTCCGCACCCTCTTCAAATTCACCGCCACCTCCTCCGCCCTCCGCAAGCTCCGCCGCGCCCCCTCCCTCTCTGTCTCCGACCTCCGATCCCTCCTCGCCGAGATACCCTCCGACGGCGACGGAAACTCCAAGGGTGGCATAATCGTAATTGTCCGCGGCACCGTCGACGCCAAGTCAGCCGTCGATGGCACCTGGAAAACCCTGAGACCTGGTGTCTTGGTTTCTCGCGAGTCCGGCGATAAAGGCGTTATTCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTCTTCTAACTGATGTTGGACGGCGGCCAAATGCTGAGTATGTTGTTGTAAACATGGATGGCTCAAGACATCCTTTACCTTTGACAACAGTCTATCATAAATTGCAACCAATAACTGCTTCTCCTTATACTTTTTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCATTGGGGAAGGATATCACTGCTGTTGGCCTTTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCGTGCAAATATCTACCATATTTTCTGTCTGACTTGAGTAAAGATCAGATGATAATGGATCTTTCCATCAAAACAAAAATACTGTTTTGGGGTGGTATTGCTCTTGGTTCAATGTCAGTTGGGGTCCTTGGCTATGCAGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCTCAGATGGATGATGAGATTGAAGATGCTCCAGATGGACAATTATGTGTTATATGTCTAATGAGGAGAAGGCGTTCTGTCTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGTGAAGTGGCACCCAAATGTCCCGTTTGTCGTCAGGAGATCCGAGATTCAGTGCGGATTTATGAATCTTGA >Glyma18g27930.2 sequence type=CDS gene model=Glyma18g27930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCATCAGGAGCAAGCCTTAGTGTCCCTTCTCTCTCAGCTCGCCCTTTCCTTGGATGGTGCCGTTTTGGGCTTCGCCTTGGCCTACGCCGCCGTCCGCACCCTCTTCAAATTCACCGCCACCTCCTCCGCCCTCCGCAAGCTCCGCCGCGCCCCCTCCCTCTCTGTCTCCGACCTCCGATCCCTCCTCGCCGAGATACCCTCCGACGGCGACGGAAACTCCAAGGGTGGCATAATCGTAATTGTCCGCGGCACCGTCGACGCCAAGTCAGCCGTCGATGGCACCTGGAAAACCCTGAGACCTGGTGTCTTGGTTTCTCGCGAGTCCGGCGATAAAGGCGTTATTCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTCTTCTAACTGATGTTGGACGGCGGCCAAATGCTGAGTATGTTGTTGTAAACATGGATGGCTCAAGACATCCTTTACCTTTGACAACAGTCTATCATAAATTGCAACCAATAACTGCTTCTCCTTATACTTTTTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCATTGGGGAAGGATATCACTGCTGTTGGCCTTTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCGTGCAAATATCTACCATATTTTCTGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCTCAGATGGATGATGAGATTGAAGATGCTCCAGATGGACAATTATGTGTTATATGTCTAATGAGGAGAAGGCGTTCTGTCTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGTGAAGTGGCACCCAAATGTCCCGTTTGTCGTCAGGAGATCCGAGATTCAGTGCGGATTTATGAATCTTGA
>Glyma18g27930.1 sequence type=predicted peptide gene model=Glyma18g27930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSHQEQALVSLLSQLALSLDGAVLGFALAYAAVRTLFKFTATSSALRKLRRAPSLSVSDLRSLLAEIPSDGDGNSKGGIIVIVRGTVDAKSAVDGTWKTLRPGVLVSRESGDKGVILQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFLLTDVGRRPNAEYVVVNMDGSRHPLPLTTVYHKLQPITASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGLCSLKNGIAEIKSCKYLPYFLSDLSKDQMIMDLSIKTKILFWGGIALGSMSVGVLGYAVVRNWNKWKQWKQQRQLQQQRQAVSDVEPQMDDEIEDAPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIYES* >Glyma18g27930.2 sequence type=predicted peptide gene model=Glyma18g27930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSHQEQALVSLLSQLALSLDGAVLGFALAYAAVRTLFKFTATSSALRKLRRAPSLSVSDLRSLLAEIPSDGDGNSKGGIIVIVRGTVDAKSAVDGTWKTLRPGVLVSRESGDKGVILQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFLLTDVGRRPNAEYVVVNMDGSRHPLPLTTVYHKLQPITASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGLCSLKNGIAEIKSCKYLPYFLNWNKWKQWKQQRQLQQQRQAVSDVEPQMDDEIEDAPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIYES*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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