Glyma18g27690 - SoyBase

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Report for Sequence Feature Glyma18g27690

Feature Type:	gene_model
Chromosome:	Gm18
Start:	31639130
stop:	31639927
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g27690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10530	AT	Annotation by Michelle Graham. TAIR10: Concanavalin A-like lectin protein kinase family protein \| chr5:3324978-3326933 REVERSE LENGTH=651	SoyBase	E_val: 4.00E-37	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PF00139	PFAM	Legume lectin domain	JGI		ISS
UniRef100_G7LII1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lectin alpha chain n=1 Tax=Medicago truncatula RepID=G7LII1_MEDTR	SoyBase	E_val: 1.00E-107	ISS
UniRef100_I1N1T0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N1T0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g27690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g27690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g150100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g27690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g27690

Limit To All Plant Sequences

>Glyma18g27690.1   sequence type=CDS   gene model=Glyma18g27690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATCAAAAACTCAAGGGCTCAAACACAAACCCTCTTCTCTATTCTCGTGCTCATTATTTCCTTCCTTGCGTTGGTCCACAACGTTAAATCAGTTTCTTTCTCATTCCCTAGTTTTGGCTCCTACACAAACGACATCACCCTCCAAGGCGATGCCTATGTCAATTCAGAAGGCGCCATAAAGCTCACACCTGTTGCCCCCAACAGCGTTGGTAGAGCGTCCTACGCTGCACCCGTGCACCTTTGGGACGCCAAAACCGGCAAGCTCGCCGGTTTCAACACAACCTTCTCCTTCGTCGTTATGCCGAATGTTCCTGGACTCTTTGGCGACGGCATCGCCTTCTTCCTCGCACCGTTCAACTCCAACATCCCCAACAACTCAAGTGGTGGATTCCTCGGACTCTTCAGCCCTAACTATGCCCTAAATGTATACAAAAACCAAATAGTGGCCGTTGAATTAGACTCTTTCAGTGGGAACCCCTGGGACCCTCCCTCTGCCCATGTGGGCATTGATGTTAACTCCATTGCTTCGGTGGCGACGAGAAAATGGGAAACTGGAAATGCTGTGAATGGGTTTGTTGCATATGCGAATTTGAACTATGAGCCCGTTGGCAAGAGTTTAAACGTACTTGTAACATACCCTGGAAGCAAAGTGAATGCGACTAGCCTCTCGTTTGTGATTGATTTGAGAACTGTTCTGCCAGAATGGGTTACAGTTGGGTTCTCAGGTGCCACAGGACAATTGGTTGAAATACACAAGATTTTCTCTTGGACCTTCACGTCTAGCTTCTATTAA

Predicted protein sequences of Glyma18g27690

Limit To All Plant Sequences

>Glyma18g27690.1   sequence type=predicted peptide   gene model=Glyma18g27690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIKNSRAQTQTLFSILVLIISFLALVHNVKSVSFSFPSFGSYTNDITLQGDAYVNSEGAIKLTPVAPNSVGRASYAAPVHLWDAKTGKLAGFNTTFSFVVMPNVPGLFGDGIAFFLAPFNSNIPNNSSGGFLGLFSPNYALNVYKNQIVAVELDSFSGNPWDPPSAHVGIDVNSIASVATRKWETGNAVNGFVAYANLNYEPVGKSLNVLVTYPGSKVNATSLSFVIDLRTVLPEWVTVGFSGATGQLVEIHKIFSWTFTSSFY*

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