Glyma18g26790 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma18g26790): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma18g26790): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma18g26790

Feature Type:	gene_model
Chromosome:	Gm18
Start:	30781978
stop:	30784144
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g26790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03780	AT	Annotation by Michelle Graham. TAIR10: targeting protein for XKLP2 \| chr1:947785-951696 REVERSE LENGTH=758	SoyBase	E_val: 4.00E-89	ISS
GO:0000087	GO-bp	Annotation by Michelle Graham. GO Biological Process: M phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000280	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear division	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0016458	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing	SoyBase	N/A	ISS
GO:0016572	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone phosphorylation	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0042127	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0051225	GO-bp	Annotation by Michelle Graham. GO Biological Process: spindle assembly	SoyBase	N/A	ISS
GO:0051258	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein polymerization	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0008017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule binding	SoyBase	N/A	ISS
PTHR14326	Panther	TARGETING PROTEIN FOR XKLP2	JGI		ISS
PTHR14326:SF11	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF12214	PFAM	Cell cycle regulated microtubule associated protein	JGI		ISS
UniRef100_F4I2H7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Targeting protein for XKLP2 n=1 Tax=Arabidopsis thaliana RepID=F4I2H7_ARATH	SoyBase	E_val: 5.00E-86	ISS
UniRef100_UPI000233EF77	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EF77 related cluster n=1 Tax=unknown RepID=UPI000233EF77	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g26790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g26790 not represented in the dataset	Glyma18g26790 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g26790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g150900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g26790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g26790

Limit To All Plant Sequences

>Glyma18g26790.2   sequence type=transcript   gene model=Glyma18g26790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTCAGAATTAGAGATGAAGAAAGGGGCATTGATTCTCCAACACAGGCTGAAGAGATTGACACAAGGGCTCCATTCCAATCAGTTATACATCATATTACAGAACCAAAAACACCTTTACTCCAAACTTCACTAAGAGCCCACCCACCCAAAGTGAAAACCTCATTAGAATTAGAGCAAGAGGAGCTTGAGAAGATCCCTAAATTCAAGGCAATACCTCTAAATAAGAAGATCTTTGAAAGTAAAGGGGATATTGGAGTATTCTGCCTTACCAAGAAACATGTTAGCGAACCTCAAGAATTTCACTTTGCCACAGACGAAAGGATTCCGCCACCTGCTGCCATGGCTGATTTATTTGGCAAGCTTTCTTTGAATTCTGAACCTTCACGTAATCACAACCCAATCCCAAGAAACACGACTCCAAATCCGTTTCATCTTCACACAGAGAAAAGAGGTGCTGAGAAAGAGAAGAAGCTGGCCATGGACCTTCTGCAGAAACAGTGGGAAGAGGAAAACGCAAGGATTCCCAAGGCTAATCCATACCCTTACACCACTGATTACCCTGTGATCCCAGCAAAACCAGAACCAAAGCAATGCACAAGACCAAAGCCATTCCAATTGGAGAGCCTGGTGACACACGAGGATGAGATGCAAAAGGAACACAAAGAAAGACACATAATGGAAAAAGAAGAGGCTCAAATGAGAGCATTCAAGGCACAACCAATCATAAAAGAGGACCCAATCCCCGTTCCGAGAAGGTCCGCAAACCCCTAACCCAAGTTCAGGAATTTAGTTTACATGTGAATCAT

Coding sequences of Glyma18g26790

Limit To All Plant Sequences

>Glyma18g26790.1   sequence type=CDS   gene model=Glyma18g26790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTCAGAATTAGAGATGAAGAAAGGGGCATTGATTCTCCAACACAGGCTGAAGAGATTGACACAAGGGCTCCATTCCAATCAGTTATACATCATATTACAGAACCAAAAACACCTTTACTCCAAACTTCACTAAGAGCCCACCCACCCAAAGTGAAAACCTCATTAGAATTAGAGCAAGAGGAGCTTGAGAAGATCCCTAAATTCAAGGCAATACCTCTAAATAAGAAGATCTTTGAAAGTAAAGGGGATATTGGAGTATTCTGCCTTACCAAGAAACATGTTAGCGAACCTCAAGAATTTCACTTTGCCACAGACGAAAGGATTCCGCCACCTGCTGCCATGGCTGATTTATTTGGCAAGCTTTCTTTGAATTCTGAACCTTCACGTAATCACAACCCAATCCCAAGAAACACGACTCCAAATCCGTTTCATCTTCACACAGAGAAAAGAGGTGCTGAGAAAGAGAAGAAGCTGGCCATGGACCTTCTGCAGAAACAGTGGGAAGAGGAAAACGCAAGGATTCCCAAGGCTAATCCATACCCTTACACCACTGATTACCCTGTGATCCCAGCAAAACCAGAACCAAAGCAATGCACAAGACCAAAGCCATTCCAATTGGAGAGCCTGGTGACACACGAGGATGAGATGCAAAAGGAACACAAAGAAAGACACATAATGGAAAAAGAAGAGGCTCAAATGAGAGCATTCAAGGCACAACCAATCATAAAAGAGAAAAGAAAATTCATAAAAGTATTCATGGTTTTTACACAGTACTACTACTCAAGAAAAGAAAATTCGGAAAAGTATACTTGGTTTTCACACAGTACTGAAGTAGCTTATTTTTTTACAGAATACAGAAAAGGAAATGATATAGAGGAAGAGAAAGAGTTGAAACAGATGAGAAGGACAATGGTTCCACATGCTAGGCCAGGTCCTAATAACATGCAAGATCTACCCGAAATATAG

>Glyma18g26790.2   sequence type=CDS   gene model=Glyma18g26790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTCAGAATTAGAGATGAAGAAAGGGGCATTGATTCTCCAACACAGGCTGAAGAGATTGACACAAGGGCTCCATTCCAATCAGTTATACATCATATTACAGAACCAAAAACACCTTTACTCCAAACTTCACTAAGAGCCCACCCACCCAAAGTGAAAACCTCATTAGAATTAGAGCAAGAGGAGCTTGAGAAGATCCCTAAATTCAAGGCAATACCTCTAAATAAGAAGATCTTTGAAAGTAAAGGGGATATTGGAGTATTCTGCCTTACCAAGAAACATGTTAGCGAACCTCAAGAATTTCACTTTGCCACAGACGAAAGGATTCCGCCACCTGCTGCCATGGCTGATTTATTTGGCAAGCTTTCTTTGAATTCTGAACCTTCACGTAATCACAACCCAATCCCAAGAAACACGACTCCAAATCCGTTTCATCTTCACACAGAGAAAAGAGGTGCTGAGAAAGAGAAGAAGCTGGCCATGGACCTTCTGCAGAAACAGTGGGAAGAGGAAAACGCAAGGATTCCCAAGGCTAATCCATACCCTTACACCACTGATTACCCTGTGATCCCAGCAAAACCAGAACCAAAGCAATGCACAAGACCAAAGCCATTCCAATTGGAGAGCCTGGTGACACACGAGGATGAGATGCAAAAGGAACACAAAGAAAGACACATAATGGAAAAAGAAGAGGCTCAAATGAGAGCATTCAAGGCACAACCAATCATAAAAGAGGACCCAATCCCCGTTCCGAGAAGGTCCGCAAACCCCTAA

Predicted protein sequences of Glyma18g26790

Limit To All Plant Sequences

>Glyma18g26790.1   sequence type=predicted peptide   gene model=Glyma18g26790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFRIRDEERGIDSPTQAEEIDTRAPFQSVIHHITEPKTPLLQTSLRAHPPKVKTSLELEQEELEKIPKFKAIPLNKKIFESKGDIGVFCLTKKHVSEPQEFHFATDERIPPPAAMADLFGKLSLNSEPSRNHNPIPRNTTPNPFHLHTEKRGAEKEKKLAMDLLQKQWEEENARIPKANPYPYTTDYPVIPAKPEPKQCTRPKPFQLESLVTHEDEMQKEHKERHIMEKEEAQMRAFKAQPIIKEKRKFIKVFMVFTQYYYSRKENSEKYTWFSHSTEVAYFFTEYRKGNDIEEEKELKQMRRTMVPHARPGPNNMQDLPEI*

>Glyma18g26790.2   sequence type=predicted peptide   gene model=Glyma18g26790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFRIRDEERGIDSPTQAEEIDTRAPFQSVIHHITEPKTPLLQTSLRAHPPKVKTSLELEQEELEKIPKFKAIPLNKKIFESKGDIGVFCLTKKHVSEPQEFHFATDERIPPPAAMADLFGKLSLNSEPSRNHNPIPRNTTPNPFHLHTEKRGAEKEKKLAMDLLQKQWEEENARIPKANPYPYTTDYPVIPAKPEPKQCTRPKPFQLESLVTHEDEMQKEHKERHIMEKEEAQMRAFKAQPIIKEDPIPVPRRSANP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain