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Report for Sequence Feature Glyma18g26630

Feature Type:gene_model
Chromosome:Gm18
Start:30687017
stop:30691801
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g26630
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30900AT Annotation by Michelle Graham. TAIR10: TRICHOME BIREFRINGENCE-LIKE 43 | chr2:13150481-13152417 FORWARD LENGTH=368 SoyBaseE_val: 2.00E-106ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
PTHR13533Panther FAMILY NOT NAMED JGI ISS
PTHR13533:SF3Panther gb def: unknown protein [takifugu rubripes] JGI ISS
PF03005PFAM Arabidopsis proteins of unknown function JGI ISS
UniRef100_I1N1S5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1S5_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q6DR10UniRef Annotation by Michelle Graham. Most informative UniRef hit: Trichome birefringence-like 43 protein n=2 Tax=Arabidopsis thaliana RepID=Q6DR10_ARATH SoyBaseE_val: 8.00E-104ISS

Expression Patterns of Glyma18g26630
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g26630 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g151000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g26630
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g26630
>Glyma18g26630.2   sequence type=CDS   gene model=Glyma18g26630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGTGGGAGACTCTTTGGGTTTGAACCAATGGCAATCACTCACTTGCATGCTTCACATAGCTGTGCCACAAGCCCCATACAGCTTAGCAAGGAATGGAGATGTCTCCATTTTCACCTTTCCGACCTATGATGTTAAGGTAATGTTGTCGCGCAATGCATTACTTGTGGACATTGTTGGTGAGAGTATCGGTCGAGTATTGAAACTAGATTCAATTCAAGCTGGCCAAACGTGGAAAGGAATAGATGTAATGATATTTGACTCTTGGCATTGGTGGATTCACACAGGAAGAAAACAACCATGGGATTTGATTCAAGTAGGGAATCGTACATATAGAGACATGGATCGCTTGGGTTCATATGAGATTGCATTGAATACATGGGCCAAATGGGTTGATTACAATATTGATCCTACCCGAACAAGGGTGTTCTTCCAAGGAGTCTCTCCAGATCATCAAAATCCAGCGCAATGGGGTGAGCCAAGAGCAAACTTATGTGAAGGGAAAACTAGGCCAATATTGGGATTCAGGTACCCAGGAGGACCACTCCCAGCAGAGTTGGTATTGGAGAAAGTGCTAAGAGCCATGCAAAAGCCTGTGTATTTGCCGGACATTACTACCCTATCCCAACTAAGGATAGATGGCCACCCGTCTGTTTATGGCTCTGGAGGGCATTTGGACCCGGATTGTAGCCACTGGTGCCTAGCTGGTGTTCCTGATACTTGGAATGAGCTTCAGTATGCTAGTCTCGTTAAAAATTAA
Predicted protein sequences of Glyma18g26630
>Glyma18g26630.2   sequence type=predicted peptide   gene model=Glyma18g26630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVGDSLGLNQWQSLTCMLHIAVPQAPYSLARNGDVSIFTFPTYDVKVMLSRNALLVDIVGESIGRVLKLDSIQAGQTWKGIDVMIFDSWHWWIHTGRKQPWDLIQVGNRTYRDMDRLGSYEIALNTWAKWVDYNIDPTRTRVFFQGVSPDHQNPAQWGEPRANLCEGKTRPILGFRYPGGPLPAELVLEKVLRAMQKPVYLPDITTLSQLRIDGHPSVYGSGGHLDPDCSHWCLAGVPDTWNELQYASLVKN*






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