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Report for Sequence Feature Glyma18g26180

Feature Type:gene_model
Chromosome:Gm18
Start:30296782
stop:30299113
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g26180
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07460AT Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF538 | chr3:2384837-2385617 REVERSE LENGTH=177 SoyBaseE_val: 1.00E-44ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04398PFAM Protein of unknown function, DUF538 JGI ISS
UniRef100_G7KZ44UniRef Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Medicago truncatula RepID=G7KZ44_MEDTR SoyBaseE_val: 8.00E-63ISS
UniRef100_I1N1R8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1R8_SOYBN SoyBaseE_val: 3.00E-133ISS

Expression Patterns of Glyma18g26180
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g26180
ParalogEvidenceComments
Glyma08g45780 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g26180 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g151900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g26180
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g26180
>Glyma18g26180.1   sequence type=CDS   gene model=Glyma18g26180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCCTTCCCTCACAATGTCTTCCTACCCATCCTTGTCTTTCCAATCATTATTTGTTGCTGCTCCGCCTCCTTGTTGGGTCGGAGCAATGCGACGACAATCTACGAGGTCCTGAGCGAGCACGGGCTGCCCATGGGCCTGTTCCCCCAGGGCGTGCGGGAGTTCGCGGTGGGCGAGGACGGGCTCTTCTGGGTGCGCCTTGACGAGGCCTGCAACGCCAAGTTCGAGAACGAGCTGCATTACGAGCGCAACGTCTCCGGCCACCTCAGCTACGGCATGATCGACGCCCTCTCCGGCCTCGAGGCCCAGGATCTCTTCCTCTGGTTCCAGGTCATGAGCATCCGCGTCGACGTCCCCAGCACCGGCCTCATCTACTTCGACGTCGGCGCCGCCTCCAAGCGCTTCCCCCTCTCCCTCTTCGAAACGCCGCCCGAATGCGTCGCCGTTAGCTCCCAACAACAAGACGCCCCTTCCCACCACCAGGGTCAGGTTCAATCTGGAAGGATTCGGCATAAGCTCAATCAGGGAACCTCTGGAAGAGATGTTCTATAG
Predicted protein sequences of Glyma18g26180
>Glyma18g26180.1   sequence type=predicted peptide   gene model=Glyma18g26180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSFPHNVFLPILVFPIIICCCSASLLGRSNATTIYEVLSEHGLPMGLFPQGVREFAVGEDGLFWVRLDEACNAKFENELHYERNVSGHLSYGMIDALSGLEAQDLFLWFQVMSIRVDVPSTGLIYFDVGAASKRFPLSLFETPPECVAVSSQQQDAPSHHQGQVQSGRIRHKLNQGTSGRDVL*






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