Glyma18g25845 - SoyBase

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Report for Sequence Feature Glyma18g25845

Feature Type:	gene_model
Chromosome:	Gm18
Start:	29725523
stop:	29727011
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g25845

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12970	AT	Annotation by Michelle Graham. TAIR10: stomagen \| chr4:7586244-7586798 REVERSE LENGTH=102	SoyBase	E_val: 9.00E-31	ISS
GO:0007267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell-cell signaling	SoyBase	N/A	ISS
GO:0010375	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex patterning	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:2000038	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal complex development	SoyBase	N/A	ISS
GO:2000123	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of stomatal complex development	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7KY15	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EPIDERMAL PATTERNING FACTOR-like protein n=1 Tax=Medicago truncatula RepID=G7KY15_MEDTR	SoyBase	E_val: 2.00E-50	ISS
UniRef100_I1KYZ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYZ9_SOYBN	SoyBase	E_val: 2.00E-64	ISS

Expression Patterns of Glyma18g25845

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g25845 not represented in the dataset	Glyma18g25845 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g25845 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g152800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g25845

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g25845

Limit To All Plant Sequences

>Glyma18g25845.1   sequence type=CDS   gene model=Glyma18g25845   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGACACCAAACTACCTGAAGTACTCTTGCTACTCTTCACCTTAATTCTTGCAGCTAAATTTACGCAAGGAATTAGAACAGAAGAATTGGTATCTCAATCCTCTCATCCCCAAAGAGAATCAAGTTTGGAGGATGTCAATGAGGCATGGAAAATGAGGAATTCTAGGAGACTGATGATTGGATCCACAGCACCAACTTGTACGTACAACGAATGTAGAGGTTGTAAGTATAAATGCAGAGCTGAGCAAGTGCCTGTAGAGGGAAATGACCCAATTAATAGCCCATACCACTACAGATGTGTTTGTCATAGATGA

Predicted protein sequences of Glyma18g25845

Limit To All Plant Sequences

>Glyma18g25845.1   sequence type=predicted peptide   gene model=Glyma18g25845   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDTKLPEVLLLLFTLILAAKFTQGIRTEELVSQSSHPQRESSLEDVNEAWKMRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSPYHYRCVCHR*

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