Glyma18g24530 - SoyBase

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Report for Sequence Feature Glyma18g24530

Feature Type:	gene_model
Chromosome:	Gm18
Start:	28399479
stop:	28401879
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g24530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07510	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:2393895-2394464 REVERSE LENGTH=1	SoyBase	E_val: 1.00E-83	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9SRR5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F21O3.22 protein n=2 Tax=Arabidopsis thaliana RepID=Q9SRR5_ARATH	SoyBase	E_val: 4.00E-81	ISS
UniRef100_UPI000233EB2C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EB2C related cluster n=1 Tax=unknown RepID=UPI000233EB2C	SoyBase	E_val: 5.00E-137	ISS

Expression Patterns of Glyma18g24530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g24530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g154000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g24530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g24530

Limit To All Plant Sequences

>Glyma18g24530.2   sequence type=transcript   gene model=Glyma18g24530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTATGTAACGCATAAAATAATACTAATTTGTTAGGAGCGTGTAGTGATGTTATTATCTGTTCTAAAAATTTCTGAAGTGTTTGTCCTGTGTCCCCCTTCACTTTCTTTCGAGGTTGCATTTACTTTCCCTTTCGACTTCGAAACGATCCAAAATACTACAAAGGCAAAGCAACCAGCTAAAAAGCAATCACGCCCGAAAACGAAAGCATCTCCCTCTCCCCTAAGCAAACAACTGCCCTTAACCCTCAAAAACAAGCCACCCAAACCCATCCACTTCAACCCCCCCCCCCCCAAAATCACCTCCCTCTCTCACCGGCATTGATTCTCCATGGACGAATCAGAGCAATACCCAAAGGAGTATTACCCTAACGACCAAACCCTCACCAGAAGAGTCTCCTCATCCTCGTCCTCTTCCACGACGAGCGTCCACGTGACAGCCCTAGACGGCCTGGTGAACGTGAACTCCCTCTTCACGATCGCCGTCTTCGTGGGTCTCTCCCTCACCACCCCGGGCCAGCGCAGCCTCGAGAACCGCTCCTCCTGCGACGCCGACGTTGACGTAGCCAAGAAGCTCCTCGTCTTCGAAGTGGTGTCGTTTAGCTTCTTCCTCTTCTCGTCGCTGGTAGCGCAGGGGCTGAAGCTGGCGCTGAATCTGCTCAACAGCAAGGACGCCGACGAGGCCTTCCGGGCCCACATCAACCTCAGGGCCCTAAGGCTTGGCATGCTGGGCTCCGCCATTGGCTCCGTCATGGGCTGCCTCTTCCTCGTTCTCTCCATGGTCAACGTCATCGAGATCCGATTGGGAATGCTGTCGTGCGGGAGCAAGGCCGCCGCGCACGCTGTGGCCGCGATGGTCGTTTAAGGTGGCATGAGAAGATTCTTGACTATGCTTTGATTGGTGGGTACGGTTTTCTTGTGGAAGCTACAAGAGGAGAATTTGATAATTGTAAATAAGGATGAAACTTGTTTTGTTTGAACTGAGCATTGGGTCTAAACTGCGGTTGCAGGATTTGATCAAAGTTTTTCTCTGGTTACAAGGTTGGTTTTGCATGCTGAGTCAGCAATTGAGTAATGGTTCTTTGTGTCATCAGAGCTCTTGTTCTGGTTTTCTGTTGGTGAGCATTTTAGATAGCTTAATGGCAGGGAATTTAAAGTTTAATGGATGATTTATGTGGATTATTTTAAATGGAACGAAATAATTTGTTTTGCTTCAGTGTTTTGTGAGTACTTTACTGCTTGCTTGAAGTCGACCTTAACATGGTCGATTTTTGTAGGAGATGGATTGTGTTACTGATCAAACAATTAGGTGATATGATATTGATTTGCTTGGCTTTTATTGGTCAAACCTAGTATTTGTCATGTGGTTTGGTCAATTGATTTCTCTAAATTAAGTTAGTGCACACATTCGTATAAAAGCATTCAACATTGTCTTAATTGTTACATCTGGTGTGCGGTGTACCTAAACATCTTAGTATTGTGTTAATTAAGGATACATGAGAAGTCTTTACTTTGTACTGCGGTTGGTGAAATCGTTTTCTTGAGGAAGCCACAAGATGGAAAATTTATAATCCTAAATTGTATGGGTTCAGCTTAAGACTTCTAACATCTTCTTGGATAATTGGTTGTGTCATTCATATCAATCAAAATTCTAGTATTTAAAGTCACTAGCACATCCTAGTGGCTACAATAAAGTGTTGGAGAAA

Coding sequences of Glyma18g24530

Limit To All Plant Sequences

>Glyma18g24530.1   sequence type=CDS   gene model=Glyma18g24530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGAATCAGAGCAATACCCAAAGGAGTATTACCCTAACGACCAAACCCTCACCAGAAGAGTCTCCTCATCCTCGTCCTCTTCCACGACGAGCGTCCACGTGACAGCCCTAGACGGCCTGGTGAACGTGAACTCCCTCTTCACGATCGCCGTCTTCGTGGGTCTCTCCCTCACCACCCCGGGCCAGCGCAGCCTCGAGAACCGCTCCTCCTGCGACGCCGACGTTGACGTAGCCAAGAAGCTCCTCGTCTTCGAAGTGGTGTCGTTTAGCTTCTTCCTCTTCTCGTCGCTGGTAGCGCAGGGGCTGAAGCTGGCGCTGAATCTGCTCAACAGCAAGGACGCCGACGAGGCCTTCCGGGCCCACATCAACCTCAGGGCCCTAAGGCTTGGCATGCTGGGCTCCGCCATTGGCTCCGTCATGGGCTGCCTCTTCCTCGTTCTCTCCATGGTCAACGTCATCGAGATCCGATTGGGAATGCTGTCGTGCGGGAGCAAGGCCGCCGCGCACGCTGTGGCCGCGATGGTCGTGTTGGTCTCCTCCGCTCTCGTGCTTTATATTTCCACTGCTATCTATGCTTTTACTCACTGA

>Glyma18g24530.2   sequence type=CDS   gene model=Glyma18g24530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGAATCAGAGCAATACCCAAAGGAGTATTACCCTAACGACCAAACCCTCACCAGAAGAGTCTCCTCATCCTCGTCCTCTTCCACGACGAGCGTCCACGTGACAGCCCTAGACGGCCTGGTGAACGTGAACTCCCTCTTCACGATCGCCGTCTTCGTGGGTCTCTCCCTCACCACCCCGGGCCAGCGCAGCCTCGAGAACCGCTCCTCCTGCGACGCCGACGTTGACGTAGCCAAGAAGCTCCTCGTCTTCGAAGTGGTGTCGTTTAGCTTCTTCCTCTTCTCGTCGCTGGTAGCGCAGGGGCTGAAGCTGGCGCTGAATCTGCTCAACAGCAAGGACGCCGACGAGGCCTTCCGGGCCCACATCAACCTCAGGGCCCTAAGGCTTGGCATGCTGGGCTCCGCCATTGGCTCCGTCATGGGCTGCCTCTTCCTCGTTCTCTCCATGGTCAACGTCATCGAGATCCGATTGGGAATGCTGTCGTGCGGGAGCAAGGCCGCCGCGCACGCTGTGGCCGCGATGGTCGTTTAA

Predicted protein sequences of Glyma18g24530

Limit To All Plant Sequences

>Glyma18g24530.1   sequence type=predicted peptide   gene model=Glyma18g24530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDESEQYPKEYYPNDQTLTRRVSSSSSSSTTSVHVTALDGLVNVNSLFTIAVFVGLSLTTPGQRSLENRSSCDADVDVAKKLLVFEVVSFSFFLFSSLVAQGLKLALNLLNSKDADEAFRAHINLRALRLGMLGSAIGSVMGCLFLVLSMVNVIEIRLGMLSCGSKAAAHAVAAMVVLVSSALVLYISTAIYAFTH*

>Glyma18g24530.2   sequence type=predicted peptide   gene model=Glyma18g24530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDESEQYPKEYYPNDQTLTRRVSSSSSSSTTSVHVTALDGLVNVNSLFTIAVFVGLSLTTPGQRSLENRSSCDADVDVAKKLLVFEVVSFSFFLFSSLVAQGLKLALNLLNSKDADEAFRAHINLRALRLGMLGSAIGSVMGCLFLVLSMVNVIEIRLGMLSCGSKAAAHAVAAMVV*

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