Glyma18g24270 - SoyBase

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Report for Sequence Feature Glyma18g24270

Feature Type:	gene_model
Chromosome:	Gm18
Start:	27917217
stop:	27919408
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g24270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15980	AT	Annotation by Michelle Graham. TAIR10: Coatomer, beta' subunit \| chr3:5411699-5418313 REVERSE LENGTH=909	SoyBase	E_val: 2.00E-21	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0030117	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane coat	SoyBase	N/A	ISS
GO:0030126	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: COPI vesicle coat	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
PTHR19876	Panther	COATOMER	JGI		ISS
PF04053	PFAM	Coatomer WD associated region	JGI		ISS
UniRef100_Q8L828	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Coatomer subunit beta'-3 n=1 Tax=Arabidopsis thaliana RepID=COB23_ARATH	SoyBase	E_val: 7.00E-19	ISS
UniRef100_UPI000233B376	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B376 related cluster n=1 Tax=unknown RepID=UPI000233B376	SoyBase	E_val: 4.00E-22	ISS

Expression Patterns of Glyma18g24270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g24270 not represented in the dataset	Glyma18g24270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g24270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g24270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g24270

Limit To All Plant Sequences

>Glyma18g24270.1   sequence type=CDS   gene model=Glyma18g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCATTAGAAAGAAGTATCTCAATTTCCTAATGATGAACCAAACAGAGCAAGACAGTATTATCAAACCTATCTTGTTCAAAAAAGTGTGTCAACATTTACCTTGTATAAGGCTCCGACCTGCACGCTGCATTGATTGTGATGAAACCAGGAATCCTTCTTTAATGGTAGAGCCCTTTAAACATTTTGACTCCCACTATTGCAACATGATGCTTTTGATGATGTTGGTGGTAAGACTTAATTCCACTTCTTTTTGTTTTGTTCAAGACAAGTGTGTTATATTTGTTTATTCAAATTTAAGAGTTCAGTCTTCAGGTCTGAAGTTTTGTAATTATGTGGCTCATTTTCTGGAATCACGAGGTATGATAGAAGATGCTCTTGAAGTAGCTATTGACCCTGACTACATATTTGATCTAGCAATACAGCTTGGAAAACTAGATGTTGCAAAGAGTATTGCAATAGAATTGCAGAGCGAGCAGCAGTTGGGAGAATTAGCTATGTTTTTTTTTGTGAACATTGACTCAGGGTTCTTGCATTTGATACTGGATATTTTACTAGGACAAATATTTGTGGGCAAAATACTAGCAACGCAGCATTCAAAGACAACGGTTATTAAAATAATCGTCGTAAAAAGCAATTTGGTTTTAACGACGTTATATACAACGATG

Predicted protein sequences of Glyma18g24270

Limit To All Plant Sequences

>Glyma18g24270.1   sequence type=predicted peptide   gene model=Glyma18g24270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VIRKKYLNFLMMNQTEQDSIIKPILFKKVCQHLPCIRLRPARCIDCDETRNPSLMVEPFKHFDSHYCNMMLLMMLVVRLNSTSFCFVQDKCVIFVYSNLRVQSSGLKFCNYVAHFLESRGMIEDALEVAIDPDYIFDLAIQLGKLDVAKSIAIELQSEQQLGELAMFFFVNIDSGFLHLILDILLGQIFVGKILATQHSKTTVIKIIVVKSNLVLTTLYTTM

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