SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g24260

Feature Type:gene_model
Chromosome:Gm18
Start:27916829
stop:27918364
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g24260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64600AT Annotation by Michelle Graham. TAIR10: methyltransferases;copper ion binding | chr1:23995996-23998625 FORWARD LENGTH=537 SoyBaseE_val: 1.00E-38ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0008168GO-mf Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity SoyBaseN/AISS
PTHR13184Panther FAMILY NOT NAMED JGI ISS
PTHR13184:SF5Panther gb def: agcp1858 [anopheles gambiae str. pest] JGI ISS
PF09243PFAM Mitochondrial small ribosomal subunit Rsm22 JGI ISS
UniRef100_G7LHM5UniRef Annotation by Michelle Graham. Most informative UniRef hit: RSM22-like protein n=1 Tax=Medicago truncatula RepID=G7LHM5_MEDTR SoyBaseE_val: 8.00E-43ISS
UniRef100_UPI000233D79AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D79A related cluster n=1 Tax=unknown RepID=UPI000233D79A SoyBaseE_val: 4.00E-47ISS

Expression Patterns of Glyma18g24260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g24260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g154300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g24260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g24260
>Glyma18g24260.1   sequence type=CDS   gene model=Glyma18g24260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATGAGCCACACTACCATAAAATCAGAACAAAATTTGAAATCAAGTATCAGGAAAATGAACATAAGGATTCCTGGTTTCTCCCCATCTAAGGTATTAGATTTTGGTGCGGGGACAAGTTCATCATTCTCGGCACTGCAAGAAGTTTGGCCAAAATCTTTAGAAAAAGTTAATTTAATAGAACCATCACAATCAATGCAGCGTGCAGGTCGGAGCCTTATACAAGGTCTCAAGAATTTGCCACTTATTCATAGCTATGACAACATTCAATCACTTTCTAAAAGTATCAGTAAATCAGAGAGAGAGCATGACCTTGTAATTGCTGTAAGTTTATTCTTTCAGGGTTCAAATCAGAATTTTACATTTGTATATGATTCGTGTATTCAGATTTTGGCCAATTTTTTCTTCCATACAATTTTTAATCTTTAG
Predicted protein sequences of Glyma18g24260
>Glyma18g24260.1   sequence type=predicted peptide   gene model=Glyma18g24260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KMSHTTIKSEQNLKSSIRKMNIRIPGFSPSKVLDFGAGTSSSFSALQEVWPKSLEKVNLIEPSQSMQRAGRSLIQGLKNLPLIHSYDNIQSLSKSISKSEREHDLVIAVSLFFQGSNQNFTFVYDSCIQILANFFFHTIFNL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo