Glyma18g23454 - SoyBase

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Report for Sequence Feature Glyma18g23454

Feature Type:	gene_model
Chromosome:	Gm18
Start:	27153699
stop:	27158258
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g23454

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09700	AT	Annotation by Michelle Graham. TAIR10: dsRNA-binding domain-like superfamily protein \| chr1:3137960-3140118 REVERSE LENGTH=419	SoyBase	E_val: 1.00E-18	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0010305	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation	SoyBase	N/A	ISS
GO:0010589	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf proximal/distal pattern formation	SoyBase	N/A	ISS
GO:0031054	GO-bp	Annotation by Michelle Graham. GO Biological Process: pre-miRNA processing	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0035279	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA cleavage involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0051607	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to virus	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0010445	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear dicing body	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: double-stranded RNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0035198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: miRNA binding	SoyBase	N/A	ISS
PF00035	PFAM	Double-stranded RNA binding motif	JGI		ISS
UniRef100_B9T2K0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Double-stranded RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T2K0_RICCO	SoyBase	E_val: 4.00E-45	ISS
UniRef100_I1M869	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M869_SOYBN	SoyBase	E_val: 3.00E-91	ISS

Expression Patterns of Glyma18g23454

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g23454 not represented in the dataset	Glyma18g23454 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g23454 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g146300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g23454

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g23454

Limit To All Plant Sequences

>Glyma18g23454.2   sequence type=transcript   gene model=Glyma18g23454   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTGGGGTTTTGTGTTAGATTTTTGTGTGTGTGTGTGTGTGTCTTATTATGAAGAAGAACGGAGAAAATGTTCAACGTTGATCCTTCATTTCCTAATGTCCCTACCCTCACCACTGAACAGATTCAAAAGTTTATCTCTTATAGACAAGTTTTTATGCTTGGTGGAGTACTTGGAGGAGAATAAGGAGCTGATCTTGGCAATATTGGAGCATCAAAACCTGGGAAAGTTCACTGAGATTGCACACACACTTAATGTACAAAACTCGTCTCCAAGACTTTACTTCAAAGTCAGGCATTCAATTTCCTGTCTATCATACCATTAATGAGGGACATATTCCAAAGTTTAGATCGACGGTGTGGGTTGCAGAGATGCGTTACACTTCCCCATCCACATTTTCCCAAAAAAAAGTTGTTGAACAGGATGTAGCTAGACTTGCTTTGGAGGGTATCCTCCATAGGACCAGAGATGAAGGACTCTCTCTTGTCGATCAGATTTCTCCAATTTTCAAGTCTATCATGAATGAGTATGCTCATAAACTGCATGTAGAACAACCTACATACAACAATGATAAGCAACTGCTAGGAGGGGTGCTTCCTGCTTTTATAACTTCTTTGGTTTTCAATGGTACAAGTTACACTGGTGGTCCAGCTGGAACAAAAAAGGATGTTGAGCAGTCAGCCGCAAAGGCTGCAATTCTTTCAATTATGAGTGATTCTAGCTCGGGAACTGCACTTGCCGAGGTTATTAGGTCAAAGTCTATATTTTACTATGCAGTGTTATCCGATATACAAGATTTTAATCATGTTTCAAACATGTGGAAATGCCCGTGGTATGCGTGAAATACTGAAAGAAAAATCTAGTCCAAGTTACTTGTTAAGCTCATTTATATTTTTCTTTGTTGTTTATCGTGGGTTTTAATTTTGCTCATGGTTTGTCTATGATGAGAATGAGTATCTACTAAAGAAAGTATGTGTTGTGCTAACTGTTATTTTATGACAGGGCAACTGGTGCTGTGTACCCTTCTCGAAGATAGGAAGAAGGAAGGGCATGTTAGATTATCCTGTCTCACAGGATGCGGATGAAAACATACAAGATTATTTATCGGGTTTGTGGGAGAATGTTTTTTAAAGCATTGACAGAGTAATCTTGTGCCCTGGGCAAAATGTGATTTTAAGTTGCCGGTGCTATGTCCAGTTTCTGTAGTAGTTTATTTCTCCCAACTGTTACAATTCAGTGTGCTTTCATTAATGTGGGCCTCTTGTTGTGGTATTCTTGCTGCATACATTGCATCTGATAAACTGCAATGTTTTTATGAATGCTTGAAAGATTAATCAGCATGGTTAACCATTTCAGTTTGCAAACTTTTTTTTTATCCTTTCGAATTTAGTAATTCAAATGTCTCTCAGTCTAACAAGATTCGAGGATGGCCAAGCTATATGACGGTTGCGTATTACGACAGTAATGAGTTAACGTTGAAG

Coding sequences of Glyma18g23454

Limit To All Plant Sequences

>Glyma18g23454.1   sequence type=CDS   gene model=Glyma18g23454   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACAAAACTCGTCTCCAAGACTTTACTTCAAAGTCAGGCATTCAATTTCCTGTCTATCATACCATTAATGAGGGACATATTCCAAAGTTTAGATCGACGGTGTGGGTTGCAGAGATGCGTTACACTTCCCCATCCACATTTTCCCAAAAAAAAGTTGTTGAACAGGATGTAGCTAGACTTGCTTTGGAGGGTATCCTCCATAGGACCAGAGATGAAGGACTCTCTCTTGTCGATCAGATTTCTCCAATTTTCAAGTCTATCATGAATGAGTATGCTCATAAACTGCATGTAGAACAACCTACATACAACAATGATAAGCAACTGCTAGGAGGGGTGCTTCCTGCTTTTATAACTTCTTTGGTTTTCAATGGTACAAGTTACACTGGTGGTCCAGCTGGAACAAAAAAGGATGTTGAGCAGTCAGCCGCAAAGGCTGCAATTCTTTCAATTATGAGTGATTCTAGCTCGGGAACTGCACTTGCCGAGGTTATTAGGTCAAAGTCTATATTTTACTATGCAGTGTTATCCGATATACAAGATTTTAATCATGTTTCAAACATGTGGAAATGCCCGTGGTATGCGTGA

>Glyma18g23454.2   sequence type=CDS   gene model=Glyma18g23454   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACAAAACTCGTCTCCAAGACTTTACTTCAAAGTCAGGCATTCAATTTCCTGTCTATCATACCATTAATGAGGGACATATTCCAAAGTTTAGATCGACGGTGTGGGTTGCAGAGATGCGTTACACTTCCCCATCCACATTTTCCCAAAAAAAAGTTGTTGAACAGGATGTAGCTAGACTTGCTTTGGAGGGTATCCTCCATAGGACCAGAGATGAAGGACTCTCTCTTGTCGATCAGATTTCTCCAATTTTCAAGTCTATCATGAATGAGTATGCTCATAAACTGCATGTAGAACAACCTACATACAACAATGATAAGCAACTGCTAGGAGGGGTGCTTCCTGCTTTTATAACTTCTTTGGTTTTCAATGGTACAAGTTACACTGGTGGTCCAGCTGGAACAAAAAAGGATGTTGAGCAGTCAGCCGCAAAGGCTGCAATTCTTTCAATTATGAGTGATTCTAGCTCGGGAACTGCACTTGCCGAGGTTATTAGGTCAAAGTCTATATTTTACTATGCAGTGTTATCCGATATACAAGATTTTAATCATGTTTCAAACATGTGGAAATGCCCGTGGTATGCGTGA

Predicted protein sequences of Glyma18g23454

Limit To All Plant Sequences

>Glyma18g23454.1   sequence type=predicted peptide   gene model=Glyma18g23454   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYKTRLQDFTSKSGIQFPVYHTINEGHIPKFRSTVWVAEMRYTSPSTFSQKKVVEQDVARLALEGILHRTRDEGLSLVDQISPIFKSIMNEYAHKLHVEQPTYNNDKQLLGGVLPAFITSLVFNGTSYTGGPAGTKKDVEQSAAKAAILSIMSDSSSGTALAEVIRSKSIFYYAVLSDIQDFNHVSNMWKCPWYA*

>Glyma18g23454.2   sequence type=predicted peptide   gene model=Glyma18g23454   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYKTRLQDFTSKSGIQFPVYHTINEGHIPKFRSTVWVAEMRYTSPSTFSQKKVVEQDVARLALEGILHRTRDEGLSLVDQISPIFKSIMNEYAHKLHVEQPTYNNDKQLLGGVLPAFITSLVFNGTSYTGGPAGTKKDVEQSAAKAAILSIMSDSSSGTALAEVIRSKSIFYYAVLSDIQDFNHVSNMWKCPWYA*

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