SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G03280 | AT | Annotation by Michelle Graham. TAIR10: Transcription factor TFIIE, alpha subunit | chr1:803635-806758 FORWARD LENGTH=479 | SoyBase | E_val: 2.00E-175 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0006367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription initiation from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0007346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005673 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: transcription factor TFIIE complex | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| KOG2593 | KOG | Transcription initiation factor IIE, alpha subunit | JGI | ISS | |
| PTHR13097 | Panther | TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT | JGI | ISS | |
| PF02002 | PFAM | TFIIE alpha subunit | JGI | ISS | |
| UniRef100_D7KCD4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor IIE alpha subunit family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KCD4_ARALL | SoyBase | E_val: 2.00E-177 | ISS |
| UniRef100_UPI000233EB28 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EB28 related cluster n=1 Tax=unknown RepID=UPI000233EB28 | SoyBase | E_val: 0 | ISS |
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Glyma18g23247 not represented in the dataset |
Glyma18g23247 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g146000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g23247.1 sequence type=CDS gene model=Glyma18g23247 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCGATCACTACAACAAGCTGGTTAAACTAGCGGCGAGGGCTTTCTACGATGATCTGACGAGTAAAGGAGAGAATCAACCCAAATCGGGAAGGAGTGATAACAGAGGAATCGCTGTGGTGATTCTCGATGCCCTCACGAGGCGACAATGGGTCCGAGAAGAAGACTTGGCAAAAGATCTCAAATTACACACAAAACAGCTTCGCCGAACTCTCCGGTTTTTTGAAGAGGAGAAGATCATTACTCGAGAATATAGGAGAGAGACAGCAAAAGGAGCAAAAATGTATAGTGCTGCTACAGCTGCTACAGTTGATGTTCAACTAACTGGAAAAGAGGGAGAAGAAAAGGTCAAGTTGCACACACACTCTTACTGTTGTCTAGATTATGCACAGATATATGATGTGGTTAGGTACAGAATACATCGCATGAAGAAGCTGCTGAAAGATGAATTGGACAACAAGAACACAATTGAGGAATATATCTGTAGAAAATGTGGAAAAAGATATAATGCTCTGGATGCATTGCGATTAGTATCTTTTGAAGATGATGACTTCCATTGTGAAAGTTGTAATGGAAAACTTGAGGTAGAAAGTGACAAATTTGTTGCTCAAGAAGGGGGTGATGGAGATGAAAATGCAAGAAGATGGCGGCATGAAAAGTTAAAAGACATGCTTCAGAAGATGGAGGCACAGCTGAAGCCTTTAATGGACCAACTCAGCCGGGTGAAAGATTTGCCTGTTCCAGAGTTTGGCAGTCTTCTAGCGTGGGAAGCTCGGGCTAGTGCTATGGGGCGTGCAGCCAACGGAGATATTTCTGGAGATTCTAAAATGTCTCAGCTTGGATATAATGGAGCAGCAATGCCTTATAGTGGAGATACTAAGGTTGTGGTGGACTTCAATGGAACTGAAGACACAAAGGATGTTAAGTCAGAAACTGGAAGTACATCTCTAAAGGTTTTGCCACCATGGATGATTAAATCAGGGATGGTTCTTACAAAGGAACAACGTGGAGAGGTGAAGGAGGAAATGAAGATGGATGGGACTTCAATTTCCACATCAGCACAGTACTTGGACGACAAGAAATCAACAGTTGACCATGATGATAAGAGAAATATACAGGATGAGTATATTAAGGCTTATTATGCTGCTTTGCTTAAACAACAACATGAATTGGAAGCTGCTAGTAAACAAGAATTGTCAAATACACTCACTGCAAATGATCCTTCTAGCAGTGCTTCTAATCGTCAAGTTGGCATGAAATCAAAACTTGAGGAAGATGATGATGGTACTGAATGGGAGGAGGCTCCAGTTGCAGGTACTGGAAATGAAAATTACAAGGTCGATTTGAATGTTCAAGCTGATGATGCTCCAGCAGATGACGACGAAGATGTGGACTGGGAAGAAGGTTGA
>Glyma18g23247.1 sequence type=predicted peptide gene model=Glyma18g23247 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVDHYNKLVKLAARAFYDDLTSKGENQPKSGRSDNRGIAVVILDALTRRQWVREEDLAKDLKLHTKQLRRTLRFFEEEKIITREYRRETAKGAKMYSAATAATVDVQLTGKEGEEKVKLHTHSYCCLDYAQIYDVVRYRIHRMKKLLKDELDNKNTIEEYICRKCGKRYNALDALRLVSFEDDDFHCESCNGKLEVESDKFVAQEGGDGDENARRWRHEKLKDMLQKMEAQLKPLMDQLSRVKDLPVPEFGSLLAWEARASAMGRAANGDISGDSKMSQLGYNGAAMPYSGDTKVVVDFNGTEDTKDVKSETGSTSLKVLPPWMIKSGMVLTKEQRGEVKEEMKMDGTSISTSAQYLDDKKSTVDHDDKRNIQDEYIKAYYAALLKQQHELEAASKQELSNTLTANDPSSSASNRQVGMKSKLEEDDDGTEWEEAPVAGTGNENYKVDLNVQADDAPADDDEDVDWEEG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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