Glyma18g23030 - SoyBase

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Report for Sequence Feature Glyma18g23030

Feature Type:	gene_model
Chromosome:	Gm18
Start:	26542611
stop:	26546777
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g23030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31930	AT	Annotation by Michelle Graham. TAIR10: extra-large GTP-binding protein 3 \| chr1:11465832-11468961 FORWARD LENGTH=848	SoyBase	E_val: 7.00E-122	ISS
GO:0006184	GO-bp	Annotation by Michelle Graham. GO Biological Process: GTP catabolic process	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0007186	GO-bp	Annotation by Michelle Graham. GO Biological Process: G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0007188	GO-bp	Annotation by Michelle Graham. GO Biological Process: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009652	GO-bp	Annotation by Michelle Graham. GO Biological Process: thigmotropism	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0010555	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to mannitol stimulus	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:2000067	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of root morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0031234	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to internal side of plasma membrane	SoyBase	N/A	ISS
GO:0001664	GO-mf	Annotation by Michelle Graham. GO Molecular Function: G-protein coupled receptor binding	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
GO:0019001	GO-mf	Annotation by Michelle Graham. GO Molecular Function: guanyl nucleotide binding	SoyBase	N/A	ISS
GO:0031683	GO-mf	Annotation by Michelle Graham. GO Molecular Function: G-protein beta/gamma-subunit complex binding	SoyBase	N/A	ISS
PTHR10218	Panther	GTP-BINDING PROTEIN ALPHA SUBUNIT	JGI		ISS
PTHR10218:SF90	Panther	XLG (EXTRA-LARGE GTP-BINDING PROTEIN)	JGI		ISS
UniRef100_G7K9K2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Guanine nucleotide-binding protein alpha-2 subunit n=1 Tax=Medicago truncatula RepID=G7K9K2_MEDTR	SoyBase	E_val: 9.00E-142	ISS
UniRef100_I1L528	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L528_SOYBN	SoyBase	E_val: 2.00E-168	ISS

Expression Patterns of Glyma18g23030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g23030 not represented in the dataset	Glyma18g23030 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g23030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g23030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g23030

Limit To All Plant Sequences

>Glyma18g23030.1   sequence type=CDS   gene model=Glyma18g23030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGAGGGAATTAGTGAAGAAGATGCTCCTCCTGGTGCTTCCATACCTGATGATGCTTCTAATCTTGATTACTCTATAGCTATACAATATGTTGGTCCACCAGTTTCATATGAACAATTCCCACTGCTCAACCACTCTCTAGATCACAAAGATCAAATACTCACGGGGGGCATATGCGTAACAAGCTCTCCTAATCAAAGTCCAAGGGTGTCAGGAAGTTCAGATTCTATGGTTTCTGTCTTACACAACCCAGATCTTTATTCTGCATCACCTTCGGCTTCGCCTTCTTCAATTCATAATCTTCTAAGCAATCCTCATAAGCCAGGTAATGAAGTGAAGAGGGCCTCGGAAGGAGGTGGAGGTTGTGAAGCCAGTTTGAACGAAAGGAAGAAAAAGAAAATAAGAGTTTGTTACAGGTGTGGAAAAAGGAAGTGGGAAACTAAGGAGTCTTGCATAGTTTGTAATGCCAAGTATTGTAGCAACTGTGTGCTTAGAGCAATGGGATATGTGCCTGAAGGACGCAAATGTAGGAGACTGAAATTGGGTAGATATTCAAGGGTGTTGTCCCGAATGTTAAAACTTTGTCTTAACACATTGGAGGGTACATCCTTTGTGGTACAAGTAGAGGGTACATCTACTTGGGTTGTTGTGACTGAGAACAAGAGAGGGTACATCTCTTGTGGATCAGTTCTAGTGGAGGGTACATCCACTAGGTTGTTCAAAGAGAACAAGGGAGGGTACATCCCTTGTGGATCTTTGCTTCTTCGGCCGGAACAACTGATTGTCAATGGATTGCCCTTGAAGCCAGACGAGATGGCAGAATTACTTAGATGCCCTTTGCCTCCGCATAAGTTGAAGCCTGGTAGATATTGGTATGACAAAGAATCTGAATATTTCTGCTTCATTTTTTCATTGTACAAAGAGGGGGAGAAACCTAACAGAATCATAAGTTCAAACTTGAATTTCACTGGGAAACTTAGCCTTGATGCTAGTAATGGAAACACCGAGGTTTACATGAATGGTCGAGAGATCATAGAACTTGAATTGAGGGTACTCAAGTGCCCACGTGATACACACTTTTTGGTTTATGATGATGGTCGTTATGAGGAGGAAGGTCAAAATAATATCAGAGGAAACATTTGGGAGAAGGCCTCAACAAGATTTGTATGTGCCTTATTCTCTCTACCTTTTCCCCATGGTCAGCCTCATGGGAAAAAGGATGAAACTAGTCACCATACCATAGTTCCTAATTATGTGGAACAAAAAAAAGCTCAGAAGCTTCTTCTTGGAATTCAAGGATCTGGTACTAGCACTATATTTAAGCAG

Predicted protein sequences of Glyma18g23030

Limit To All Plant Sequences

>Glyma18g23030.1   sequence type=predicted peptide   gene model=Glyma18g23030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LEGISEEDAPPGASIPDDASNLDYSIAIQYVGPPVSYEQFPLLNHSLDHKDQILTGGICVTSSPNQSPRVSGSSDSMVSVLHNPDLYSASPSASPSSIHNLLSNPHKPGNEVKRASEGGGGCEASLNERKKKKIRVCYRCGKRKWETKESCIVCNAKYCSNCVLRAMGYVPEGRKCRRLKLGRYSRVLSRMLKLCLNTLEGTSFVVQVEGTSTWVVVTENKRGYISCGSVLVEGTSTRLFKENKGGYIPCGSLLLRPEQLIVNGLPLKPDEMAELLRCPLPPHKLKPGRYWYDKESEYFCFIFSLYKEGEKPNRIISSNLNFTGKLSLDASNGNTEVYMNGREIIELELRVLKCPRDTHFLVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPFPHGQPHGKKDETSHHTIVPNYVEQKKAQKLLLGIQGSGTSTIFKQ

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