Glyma18g22930 - SoyBase

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Report for Sequence Feature Glyma18g22930

Feature Type:	gene_model
Chromosome:	Gm18
Start:	26224576
stop:	26229437
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g22930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18550	AT	Annotation by Michelle Graham. TAIR10: ATP binding microtubule motor family protein \| chr1:6381656-6384340 REVERSE LENGTH=725	SoyBase	E_val: 0	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG4280	KOG	Kinesin-like protein	JGI		ISS
PTHR24115	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24115:SF324	Panther		JGI		ISS
PF00225	PFAM	Kinesin motor domain	JGI		ISS
UniRef100_B9RE57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromosome-associated kinesin KIF4A, putative n=1 Tax=Ricinus communis RepID=B9RE57_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EDFA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EDFA related cluster n=1 Tax=unknown RepID=UPI000233EDFA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g22930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g22930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g145200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g22930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g22930

Limit To All Plant Sequences

>Glyma18g22930.2   sequence type=transcript   gene model=Glyma18g22930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACGATACTTGGTAAATAAAAAGGGGCGGCGTTTCAACCGTGAACGAAGAAGAAGGCATTGAGATTGGGCAGCGTAATGAGCAGAAAACGGAGCTTCAACATCACATTTCCACCGCTTAACATCATAATTAGTTAATTACTCACCGATCCATTCTTCCCCAAACCTAACCGAAGCCGAACGAGTCAACTCTGTCCTTTCAATGCCGGCGTCAACTCGGTCCCAGACTGTACCGAACGAGTCAAACTCGGAACACGATGCCCTAAAGGAGAAGATGAAATCGCTTCTTGCGTTGTACGAGCAGCACAAGCAGAAGCACGGTGCTGCTGCAGCAGCACCTCCTCCCAGCAAGAACCCTTCTTTGAAGACTGGGACCCGCATTCTGGTGTTCGTTAGGGTTAGGCCGTTGGCGAAGAAGGAAATGGAAGCGGGTTCACGGTGCTGCGTCAGAATCGTCGATCGCCGCGACGTTTACCTAACGGAGTTTGCGTCCGAGAAGGATTACCTCAGGCTGAAGAGGCTCAGGGGTCGCCATTTTGCCTTCGATGCTTCGTTTCCCGATTCGGCTACTCAGCAAGACGTTTATTCCACCACAACTTGTGGAAGCAGTTCTGCAAGGGAGGAATGGATCAGTTTTCTGTTATGGTGCCACCGGAGCTGGAAAAACTTATACAATGCTTGGTACAGTGGAGAGCCCTGGTGTAATGGTGTTGGCAATTAAGGATTTGTTCAATAAAATTAGGATGAGAAGTTATGATGGAAACCATGCGGTTCATTTGTCCTATCTTGAGGTTTATAATGAAACTGTCAGGGATTTGCTTTCACCTGGAAGACCTCTGGTTCTCAGAGAAGATAAACAGGGGATTGTTGCAGCGGGTCTTACACAATACCGAGCTTATTCCACTGATGAAGTGATGGCATTGCTTCAACAAGGAAATCGGAGCAGAACCACAGAACCAACTCGTGCAAACGAAACATCTTCACGCTCCCATGCTATTTTGCAGGTTGTGGTTGAGTACCGAGTTAGAGATGCTGCAATGAATATTATTAAAAAAATGGGCAAGCTCTCACTGATTGATCTTGCAGGGTCAGAGAGAGCTCTTGCCACAGATCAAAGAACAGTTAGATCTCTTGAGGGTGCCAATATAAACCGATCTCTTCTGGCTCTAAGCAGCTGCATTAATGCTCTTGTAGAAGGCAAGAAGCACATACCATACCGAAATTCAAAACTCACTCAACTTCTCAAAGACTCATTAGGAGGATCATGCAACACAGTCATGATTGCAAACATAAGCCCAAGTAACCTCGCATTCGGTGAAACACAGAACACCCTTCATTGGGCTGACAGAGCTAAGGAGATTCGAACAAAGGCAATTAATGCAAATGAGGACCTATTGCCAGTGCCTGAGACAGAAACAGACCAGGCCAAGCTAGTACTTGAGCTGCAAAAGGAGAATCGTGAATTGCGAATGCAGCTAGCACGACAGCATCAGAAGATTATGACACTCCAAGCACATTCCTCAGCTCCCCCAACACCACCTTCAGCTACATCTCTTCTTTCCACTCCTCCAACTTCTGCCCCACCAAGTGAAAAACGAAGGACCAGGCCCTCTTTGTTAGCTGCAACACATTTCACTCCAGAGGCCAAGAACAAGGGAGATGAGGTAGCTGTTACAATCAGAACACTTCAACAAAGAGTTAAAGCCTTGGAGGCAGAGCTAGAGAGAGTGAAAAAGGATTACAGCTTGCAGCTAAAGCAGAAAGATGATGTCATTCGTGAGCTTTCACAAAAGGGTGGGAAAAAAGTGGTAGCAACAAGGGCTAGTCTACGGCCAAAGGAGGCAAACACTGGAGAATTGAAGAGTCCAAGCTATCGTTTTTGGTCACCAGTACAAACTGCAAAGAAACGAAGCTTTTGGGACATAACTACTGCTAACAGCCCGTCAGTCACCACATTGAATGGGAGAAAAACTAGAAGTCATCTCATTTCTGAACCTACTGCACATCCATCTATGCTTCTTCAGCCCGGATTTGCTCGAAAAAAGGGCGATATTTAAACGTGGGGTCTTCTTGGAAGGAGTTACAAGAGGAAGTTTAAGGACAGAAGCCCACGTATAGAGGTTTTTTTTTTTCCGAAGACCCTGATACGTCCTCAAAATTCTCTCTGGGCTTGAACTGGTAGTCCAACATAAAAGAAAAGAGATCATTGCAGGTTGGTGTGCTTCTCCTTCCACCTCATCTCTTCTCGTGTAATTCAGTCATAGGAAATTAGGAATTAGGATGATAGTTTCTTTAGGCCTAGTCCGCGCCAAACCAAGGTGATGTTTTACATGCTTCATTGAAGCTTTTGGAGAAATTTCCAAAATCATTATTATATTTGTACATTCATTTTTTTCCTTTTTTTTTTAATTTGAGTTGGTAAATTAACGCCCCAGCCCTCCAATATTGAAATAAGGTTTATGATTGTTTAAAGATAAAAATAA

Coding sequences of Glyma18g22930

Limit To All Plant Sequences

>Glyma18g22930.1   sequence type=CDS   gene model=Glyma18g22930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGCGTCAACTCGGTCCCAGACTGTACCGAACGAGTCAAACTCGGAACACGATGCCCTAAAGGAGAAGATGAAATCGCTTCTTGCGTTGTACGAGCAGCACAAGCAGAAGCACGGTGCTGCTGCAGCAGCACCTCCTCCCAGCAAGAACCCTTCTTTGAAGACTGGGACCCGCATTCTGGTGTTCGTTAGGGTTAGGCCGTTGGCGAAGAAGGAAATGGAAGCGGGTTCACGGTGCTGCGTCAGAATCGTCGATCGCCGCGACGTTTACCTAACGGAGTTTGCGTCCGAGAAGGATTACCTCAGGCTGAAGAGGCTCAGGGGTCGCCATTTTGCCTTCGATGCTTCGTTTCCCGATTCGGCTACTCAGCAAGACGTTTATTCCACCACAACCTCAGAACTTGTGGAAGCAGTTCTGCAAGGGAGGAATGGATCAGTTTTCTGTTATGGTGCCACCGGAGCTGGAAAAACTTATACAATGCTTGGTACAGTGGAGAGCCCTGGTGTAATGGTGTTGGCAATTAAGGATTTGTTCAATAAAATTAGGATGAGAAGTTATGATGGAAACCATGCGGTTCATTTGTCCTATCTTGAGGTTTATAATGAAACTGTCAGGGATTTGCTTTCACCTGGAAGACCTCTGGTTCTCAGAGAAGATAAACAGGGGATTGTTGCAGCGGGTCTTACACAATACCGAGCTTATTCCACTGATGAAGTGATGGCATTGCTTCAACAAGGAAATCGGAGCAGAACCACAGAACCAACTCGTGCAAACGAAACATCTTCACGCTCCCATGCTATTTTGCAGGTTGTGGTTGAGTACCGAGTTAGAGATGCTGCAATGAATATTATTAAAAAAATGGGCAAGCTCTCACTGATTGATCTTGCAGGGTCAGAGAGAGCTCTTGCCACAGATCAAAGAACAGTTAGATCTCTTGAGGGTGCCAATATAAACCGATCTCTTCTGGCTCTAAGCAGCTGCATTAATGCTCTTGTAGAAGGCAAGAAGCACATACCATACCGAAATTCAAAACTCACTCAACTTCTCAAAGACTCATTAGGAGGATCATGCAACACAGTCATGATTGCAAACATAAGCCCAAGTAACCTCGCATTCGGTGAAACACAGAACACCCTTCATTGGGCTGACAGAGCTAAGGAGATTCGAACAAAGGCAATTAATGCAAATGAGGACCTATTGCCAGTGCCTGAGACAGAAACAGACCAGGCCAAGCTAGTACTTGAGCTGCAAAAGGAGAATCGTGAATTGCGAATGCAGCTAGCACGACAGCATCAGAAGATTATGACACTCCAAGCACATTCCTCAGCTCCCCCAACACCACCTTCAGCTACATCTCTTCTTTCCACTCCTCCAACTTCTGCCCCACCAAGTGAAAAACGAAGGACCAGGCCCTCTTTGTTAGCTGCAACACATTTCACTCCAGAGGCCAAGAACAAGGGAGATGAGGTAGCTGTTACAATCAGAACACTTCAACAAAGAGTTAAAGCCTTGGAGGCAGAGCTAGAGAGAGTGAAAAAGGATTACAGCTTGCAGCTAAAGCAGAAAGATGATGTCATTCGTGAGCTTTCACAAAAGGGTGGGAAAAAAGTGGTAGCAACAAGGGCTAGTCTACGGCCAAAGGAGGCAAACACTGGAGAATTGAAGAGTCCAAGCTATCGTTTTTGGTCACCAGTACAAACTGCAAAGAAACGAAGCTTTTGGGACATAACTACTGCTAACAGCCCGTCAGTCACCACATTGAATGGGAGAAAAACTAGAAGTCATCTCATTTCTGAACCTACTGCACATCCATCTATGCTTCTTCAGCCCGGATTTGCTCGAAAAAAGGGCGATATTTAA

>Glyma18g22930.2   sequence type=CDS   gene model=Glyma18g22930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCGTTTCCCGATTCGGCTACTCAGCAAGACGTTTATTCCACCACAACTTGTGGAAGCAGTTCTGCAAGGGAGGAATGGATCAGTTTTCTGTTATGGTGCCACCGGAGCTGGAAAAACTTATACAATGCTTGGTACAGTGGAGAGCCCTGGTGTAATGGTGTTGGCAATTAAGGATTTGTTCAATAAAATTAGGATGAGAAGTTATGATGGAAACCATGCGGTTCATTTGTCCTATCTTGAGGTTTATAATGAAACTGTCAGGGATTTGCTTTCACCTGGAAGACCTCTGGTTCTCAGAGAAGATAAACAGGGGATTGTTGCAGCGGGTCTTACACAATACCGAGCTTATTCCACTGATGAAGTGATGGCATTGCTTCAACAAGGAAATCGGAGCAGAACCACAGAACCAACTCGTGCAAACGAAACATCTTCACGCTCCCATGCTATTTTGCAGGTTGTGGTTGAGTACCGAGTTAGAGATGCTGCAATGAATATTATTAAAAAAATGGGCAAGCTCTCACTGATTGATCTTGCAGGGTCAGAGAGAGCTCTTGCCACAGATCAAAGAACAGTTAGATCTCTTGAGGGTGCCAATATAAACCGATCTCTTCTGGCTCTAAGCAGCTGCATTAATGCTCTTGTAGAAGGCAAGAAGCACATACCATACCGAAATTCAAAACTCACTCAACTTCTCAAAGACTCATTAGGAGGATCATGCAACACAGTCATGATTGCAAACATAAGCCCAAGTAACCTCGCATTCGGTGAAACACAGAACACCCTTCATTGGGCTGACAGAGCTAAGGAGATTCGAACAAAGGCAATTAATGCAAATGAGGACCTATTGCCAGTGCCTGAGACAGAAACAGACCAGGCCAAGCTAGTACTTGAGCTGCAAAAGGAGAATCGTGAATTGCGAATGCAGCTAGCACGACAGCATCAGAAGATTATGACACTCCAAGCACATTCCTCAGCTCCCCCAACACCACCTTCAGCTACATCTCTTCTTTCCACTCCTCCAACTTCTGCCCCACCAAGTGAAAAACGAAGGACCAGGCCCTCTTTGTTAGCTGCAACACATTTCACTCCAGAGGCCAAGAACAAGGGAGATGAGGTAGCTGTTACAATCAGAACACTTCAACAAAGAGTTAAAGCCTTGGAGGCAGAGCTAGAGAGAGTGAAAAAGGATTACAGCTTGCAGCTAAAGCAGAAAGATGATGTCATTCGTGAGCTTTCACAAAAGGGTGGGAAAAAAGTGGTAGCAACAAGGGCTAGTCTACGGCCAAAGGAGGCAAACACTGGAGAATTGAAGAGTCCAAGCTATCGTTTTTGGTCACCAGTACAAACTGCAAAGAAACGAAGCTTTTGGGACATAACTACTGCTAACAGCCCGTCAGTCACCACATTGAATGGGAGAAAAACTAGAAGTCATCTCATTTCTGAACCTACTGCACATCCATCTATGCTTCTTCAGCCCGGATTTGCTCGAAAAAAGGGCGATATTTAA

Predicted protein sequences of Glyma18g22930

Limit To All Plant Sequences

>Glyma18g22930.1   sequence type=predicted peptide   gene model=Glyma18g22930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPASTRSQTVPNESNSEHDALKEKMKSLLALYEQHKQKHGAAAAAPPPSKNPSLKTGTRILVFVRVRPLAKKEMEAGSRCCVRIVDRRDVYLTEFASEKDYLRLKRLRGRHFAFDASFPDSATQQDVYSTTTSELVEAVLQGRNGSVFCYGATGAGKTYTMLGTVESPGVMVLAIKDLFNKIRMRSYDGNHAVHLSYLEVYNETVRDLLSPGRPLVLREDKQGIVAAGLTQYRAYSTDEVMALLQQGNRSRTTEPTRANETSSRSHAILQVVVEYRVRDAAMNIIKKMGKLSLIDLAGSERALATDQRTVRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGSCNTVMIANISPSNLAFGETQNTLHWADRAKEIRTKAINANEDLLPVPETETDQAKLVLELQKENRELRMQLARQHQKIMTLQAHSSAPPTPPSATSLLSTPPTSAPPSEKRRTRPSLLAATHFTPEAKNKGDEVAVTIRTLQQRVKALEAELERVKKDYSLQLKQKDDVIRELSQKGGKKVVATRASLRPKEANTGELKSPSYRFWSPVQTAKKRSFWDITTANSPSVTTLNGRKTRSHLISEPTAHPSMLLQPGFARKKGDI*

>Glyma18g22930.2   sequence type=predicted peptide   gene model=Glyma18g22930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRFPIRLLSKTFIPPQLVEAVLQGRNGSVFCYGATGAGKTYTMLGTVESPGVMVLAIKDLFNKIRMRSYDGNHAVHLSYLEVYNETVRDLLSPGRPLVLREDKQGIVAAGLTQYRAYSTDEVMALLQQGNRSRTTEPTRANETSSRSHAILQVVVEYRVRDAAMNIIKKMGKLSLIDLAGSERALATDQRTVRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGSCNTVMIANISPSNLAFGETQNTLHWADRAKEIRTKAINANEDLLPVPETETDQAKLVLELQKENRELRMQLARQHQKIMTLQAHSSAPPTPPSATSLLSTPPTSAPPSEKRRTRPSLLAATHFTPEAKNKGDEVAVTIRTLQQRVKALEAELERVKKDYSLQLKQKDDVIRELSQKGGKKVVATRASLRPKEANTGELKSPSYRFWSPVQTAKKRSFWDITTANSPSVTTLNGRKTRSHLISEPTAHPSMLLQPGFARKKGDI*

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