Report for Sequence Feature Glyma18g22800
Feature Type: gene_model
Chromosome: Gm18
Start: 25972253
stop: 25983796
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g22800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G23050 AT
Annotation by Michelle Graham. TAIR10: acyl-activating enzyme 17 | chr5:7731513-7735399 REVERSE LENGTH=721
SoyBase E_val: 0 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0016874 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ligase activity
SoyBase N/A ISS
KOG1175
KOG
Acyl-CoA synthetase
JGI ISS
PTHR24095 Panther
FAMILY NOT NAMED
JGI ISS
PF00501 PFAM
AMP-binding enzyme
JGI ISS
UniRef100_H9A8L1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Acyl-activating enzyme 12 n=1 Tax=Cannabis sativa RepID=H9A8L1_CANSA
SoyBase E_val: 0 ISS
UniRef100_UPI000233E9C9 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E9C9 related cluster n=1 Tax=unknown RepID=UPI000233E9C9
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g22800
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g22800
Paralog Evidence Comments
Glyma06g23115 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g22800 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g144600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g22800
Coding sequences of Glyma18g22800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g22800.1 sequence type=CDS gene model=Glyma18g22800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTTTTGGGTGAAGTGAGTGGTGCAACTTTGGATCCTACTATTACACACATGGCTTATTACAAATCGCTGAGTTCCATCACTGTGTCGGATATTGAATCCCATGGAATTGCAAGAGAAGACGCTGCCACTCTCCACCATGGTCTCGCAGAAATCATTGAAACTCACGGCAATGGCACCCCCGCCACGTGGCAGCACGTCAGCAACAGCATCCTCAACCCTGAACTTCCCTTCTCCTTTCATCAGATGCTGTACTATGGTTGCTACAAGGATTACGGTTCCGACCCACCCGCTTGGATACCCGACCCGGAAAGTGCTGCTTTGACTAATGTTTGGAAGTTGCTAGAGAGGAAGGGTGAAGAGTTTCTGTGTTCGGCATATAAGGATCCTATTACAAGCTTTGATGATTTCCAGAAATTTTCTGTCTCAAACCCTGAGATATATTGGAAATGTGTGTTGGATGAAATGAGCATATCATTTTCCAAACCACCTGAATGCATCTTACGTGATAGCCCCTCAGGGGAAAGCCCATTATCACACCCGAGTGGTCAATGGCTTCCTGGAGCATCTATTAATCCAGCACAGAATTGCTTAAATGTAAATGGCAAAAGAAGTTTGAATGATACAGTAATAATATGGCGTGATGAACAACTTGATGATCTCCCTCTACAAAGGATGACACTCGAGGAATTGCGTGACGAAGTTTGGTTAGTTGCATATGCTCTCAAATCTCTGGGTCTGGAGAAAGGATCTGCAATTGCGATTGATATGCCAATGAATGTCAAGTCTGTGGTTATCTACCTAGCTATTGTTCTTGCAAGTTATGTTGTTGTATCAATTGCTGATAGTTTTGCAGCTAGTGAAATATCAACCAGGCTTAAAATATCAAAAGCAAAAGTAATATTTACTCAGGATCTTATTATGCGTGGTGACAAAAGTATCCCCCTTTACAGTAGAGTTGTGGATGCACAGTCACCTATGGCAGTAGTTATCCCTACCAAAGGATCTGAATTTAGCATGAAACTGCGTAATGGTGACGTCTCTTGGCATGATTTTTTGGAGAAAGTCAATAATCTCAAAGGCAAGGAATTCATAGCTACTGAACAACCAATAGAGACATTCACAAACATTCTCTTTTCTTCTGGAACAACAGGTGATCCGAAGGCAATTCCATGGACCAATATTACTCCTCTAAAAGCTGCTGCAGATGCATGGTGCCACATGGACGTTCGTAAAGGTGATGTAGTGTGCTGGCCCACTAATCTTGGATGGATGATGGGGCCGTGGCTAGTATATGCATCCTTGCTAAATGGAGCTTCAGTGGCTCTGTATATTGGATCCCCTCTTGGGTCTGCCTTTGCCAAGTTTGTACAGGATGCTAAAGTAACAATGCTTGGTGTTATTCCAAGTATTGTACGGAGTTGGAGAAGTACAAATTCCACATCTGGCTATGATTGGTCTTCTATCCGTTGCTTTGGCTCCACTGGTGAAGCATCTAATGTGGATGAATACCTTTGGCTGATGGGGAGAGCTCTCTACAAGCCTATCATTGAATATTGTGGTGGTACAGAAATTGGGGGTGGATTTGTTTGCGGATCACTACTACAGGCTCAGTCATTAGCTGCTTTTAGCACACCAGCTATGTGCTGCAGTTTGTTTATTCTTGATGATGAAGGCCTTCCTATTCCACAAAATGTTCCAGGAATAGGTGAGTTGGCTCTTGGTCCGCTCATGCTAGGGGCTTCAAATACACTGCTTAACGCTGACCATTACGGTGTCTATTTCAAAGGAATGCCTCTCTTGAATGGAAAGGTATTACGGAGGCATGGAGATGTATTTGAGCGTACTGCTAGAGGATACTATCATGCACATGGTCGTTCGGATGATACGATGAACCTTGGGGGAATCAAGGTGAGTTCAGTTGAGATTGAACGCATATGCAATGGAGTAGATAGCAGCATTCTGGAAACAGCTGCAATAGGGGTACCACCTTCTGGTGGTGGGCCTGAGTTGTTGACTATAGCTGTTGTATTCAAGGATTCAAATAGCACAAAGCAAGATTTACACCAATTGAGGATGTCTTTTAATTCAGCTCTCCAAAAGAAACTAAATCCACTGTTCAGGGTTTCTCAAGTAGTCACACTGCCATCTCTTCCAAGGACGGCATCCAACAAGGTTATGAGAAGGGTTTTGCGACAGCAACTTAGCGAAACTAACCAAAATTCTAAAATATAA
Predicted protein sequences of Glyma18g22800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g22800.1 sequence type=predicted peptide gene model=Glyma18g22800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLLGEVSGATLDPTITHMAYYKSLSSITVSDIESHGIAREDAATLHHGLAEIIETHGNGTPATWQHVSNSILNPELPFSFHQMLYYGCYKDYGSDPPAWIPDPESAALTNVWKLLERKGEEFLCSAYKDPITSFDDFQKFSVSNPEIYWKCVLDEMSISFSKPPECILRDSPSGESPLSHPSGQWLPGASINPAQNCLNVNGKRSLNDTVIIWRDEQLDDLPLQRMTLEELRDEVWLVAYALKSLGLEKGSAIAIDMPMNVKSVVIYLAIVLASYVVVSIADSFAASEISTRLKISKAKVIFTQDLIMRGDKSIPLYSRVVDAQSPMAVVIPTKGSEFSMKLRNGDVSWHDFLEKVNNLKGKEFIATEQPIETFTNILFSSGTTGDPKAIPWTNITPLKAAADAWCHMDVRKGDVVCWPTNLGWMMGPWLVYASLLNGASVALYIGSPLGSAFAKFVQDAKVTMLGVIPSIVRSWRSTNSTSGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPIIEYCGGTEIGGGFVCGSLLQAQSLAAFSTPAMCCSLFILDDEGLPIPQNVPGIGELALGPLMLGASNTLLNADHYGVYFKGMPLLNGKVLRRHGDVFERTARGYYHAHGRSDDTMNLGGIKVSSVEIERICNGVDSSILETAAIGVPPSGGGPELLTIAVVFKDSNSTKQDLHQLRMSFNSALQKKLNPLFRVSQVVTLPSLPRTASNKVMRRVLRQQLSETNQNSKI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
