Report for Sequence Feature Glyma18g22790
Feature Type: gene_model
Chromosome: Gm18
Start: 25965023
stop: 25967991
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g22790
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G18520 AT
Annotation by Michelle Graham. TAIR10: tetraspanin11 | chr1:6375051-6376178 FORWARD LENGTH=271
SoyBase E_val: 7.00E-64 ISS
GO:0007568 GO-bp
Annotation by Michelle Graham. GO Biological Process: aging
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR19282 Panther
TETRASPANIN
JGI ISS
PTHR19282:SF137 Panther
JGI ISS
PF00335 PFAM
Tetraspanin family
JGI ISS
UniRef100_G7JT30 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Senescence-associated protein n=1 Tax=Medicago truncatula RepID=G7JT30_MEDTR
SoyBase E_val: 4.00E-103 ISS
UniRef100_UPI000233EDF5 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EDF5 related cluster n=1 Tax=unknown RepID=UPI000233EDF5
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g22790
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g22790
Paralog Evidence Comments
Glyma06g23090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g22790 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g144500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g22790
Coding sequences of Glyma18g22790
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g22790.1 sequence type=CDS gene model=Glyma18g22790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCCGCATAAACAACACCCTGGTCGGAATCCTCCACACACTCCCCTTACTCCTAAGTATCGCCGCCATGGGCGACTCCGCCTACATCCGCGTCCACGGCGACTGCCAGAAGGTGCTCCAGTACCCGCTCCTCTTCGGCGGCCTCTTCATATTCGTCATCTCCACCCTCGGCCTCGTCGGCGTGCTGTGCCGCGTCAACGCCGCCCTCTACCTCTACCTCCTCGCAACGTTCTTCGTCATCCTCGCCTTCTCGTCGTTCACCATTGTAGCGCTCTTCGTCACCAGAAACAACGCGCCGGATCGGGCGGGGCCGTCGGTGGGGTATGGAGTAGGGGATTTCTCGCCCTGGCTGCAGCACTACGTCACCGACCAGCGAAACTGGGACGTGGCCCAGAGTTGCTTGGTGCAGAAGCGCGTGTGTCACGGCCTCGCCGTGGACGCTAACAATAATGACTCTCTCGCTTTCAAACGGTTAACTACCACGCAGATTGGGTGCTGTAAGCCACCGTTGCGATGTGGATTCACAAAGAAGAACGCTACGTTCTGGGAAGCGCCAAAAGCGGGTCCATTAGCGAATGACACTGATTGCAGGACATGGAGCAACAGACAAGACAAACTGTGTTTCAACTGCGATTCGTGCAAAGGAGGAGTGCTGGCCAACATCAGAAGCCAGTGGAGACATCTCACCATATTCAATACATGCGTGCTCGTGCTCGTCACCACCATCTATGTCTTGGGCTGCTACGCCATCAGGAACAATCGGTTGGAGTACTCCAACTACACCACCCAGAGAAAGATCAGAATGAGAATACCCTCCACAGTAATTTGA
Predicted protein sequences of Glyma18g22790
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g22790.1 sequence type=predicted peptide gene model=Glyma18g22790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFRINNTLVGILHTLPLLLSIAAMGDSAYIRVHGDCQKVLQYPLLFGGLFIFVISTLGLVGVLCRVNAALYLYLLATFFVILAFSSFTIVALFVTRNNAPDRAGPSVGYGVGDFSPWLQHYVTDQRNWDVAQSCLVQKRVCHGLAVDANNNDSLAFKRLTTTQIGCCKPPLRCGFTKKNATFWEAPKAGPLANDTDCRTWSNRQDKLCFNCDSCKGGVLANIRSQWRHLTIFNTCVLVLVTTIYVLGCYAIRNNRLEYSNYTTQRKIRMRIPSTVI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
