Glyma18g22770 - SoyBase

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Report for Sequence Feature Glyma18g22770

Feature Type:	gene_model
Chromosome:	Gm18
Start:	25892137
stop:	25893631
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g22770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61820	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:24834505-24836223 REVERSE LENGTH=475	SoyBase	E_val: 1.00E-109	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009610	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0046482	GO-bp	Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07712	PFAM	Stress up-regulated Nod 19	JGI		ISS
UniRef100_G7LG32	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MtN19-like protein n=1 Tax=Medicago truncatula RepID=G7LG32_MEDTR	SoyBase	E_val: 3.00E-169	ISS
UniRef100_UPI000233EDF2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EDF2 related cluster n=1 Tax=unknown RepID=UPI000233EDF2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g22770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g22770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g144000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g22770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g22770

Limit To All Plant Sequences

>Glyma18g22770.1   sequence type=CDS   gene model=Glyma18g22770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTATCTCTAATGCAATGATACTTTCATTCTCAATACTATTGTTGCTACCAAGTACATCATATTCACTATATCAAAAGCCTGAAAATCATATCAAGACAGCTATTTTTGTAACTGGGAGTTTTGAAATGGGACCAGGATCAATTGCAACAAAAACATTTGAGAATATAAAGTTTCCAAGAGGTCATGTTGGAATTAAGAGTTTTGATGCGGAACTAGTTGACCAAGAAGGGAACTCTATACCTTCGTATGAAACATACCTTCATCATTGGTTTGCAATAAAGTACCACCAAAATATTACCATGTCACCTAATCCTAAGCTTCGTCGTCCTGAGGATGCTTTTTTCCAAAGAAACGAAGGCACATGTAATGGTGGCATTCTTCCACATTATTGGGGATTTGGAGTAGAATCACGAGGAACAACCTCAAAAATTCCCGATCCTTTTGCTATAGAACAAGGTAACCCAACAAAAATTAAAAATGGATATGAGGAGAAATGGTTGCTCAACATCATGGTCATTGATACACGTGGTGCACAAGATAAGAAAGCTTGCACTCAATGTAGATGTGACCATATGAATCTCCCGAAGGACTTTTATAATGTCACAAGGGATATACATAACCAAAGATTGACTACAAATTATAAAGGAGGTCTCTTTTGTTGTCAGGACAACTTACAATGCAAGCAAATAGAGGGTTTTCAAGGTTCAAGGAGAATGGTTTCCTTAAGATACAAAATTAGTTGGGTTGATTGGAACATATACCAAATACCAGTTAAGGTTTACATACTTGATTCCACCGACAAAGTGAGGTCAAATGGTTCCAAAATACTTCATGATTGTCTGGCAGAGTATACCATTCCAGCTGGTGGTGGTGGTGATTCTCCTCATGTCCAAAAAGCAAACATCCCAATGGAAAATGGAGGTTATCTAATTTATGGCACTGCTCATATGCATTCAGGTGTTGTAAATGCAACTTTATATGGACAGGATGGAAGGACTTTATGTACATCAACACCAAAATATGGAACAGGAAAAGAGGCTGGAAATGAGAAAGGTTATCTCATTGGAATGTCTGTTTGTTATCCACAACCGGGTTCAATCAAGATTCATGATGGTGAAATTTTGACTCTAGAATCTAGATATAAAAATGAGTTTCGTACTGGAGCTATGGGACATTTCTACATCTATTTGGCAGAGGAACTACCACAATGA

Predicted protein sequences of Glyma18g22770

Limit To All Plant Sequences

>Glyma18g22770.1   sequence type=predicted peptide   gene model=Glyma18g22770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFISNAMILSFSILLLLPSTSYSLYQKPENHIKTAIFVTGSFEMGPGSIATKTFENIKFPRGHVGIKSFDAELVDQEGNSIPSYETYLHHWFAIKYHQNITMSPNPKLRRPEDAFFQRNEGTCNGGILPHYWGFGVESRGTTSKIPDPFAIEQGNPTKIKNGYEEKWLLNIMVIDTRGAQDKKACTQCRCDHMNLPKDFYNVTRDIHNQRLTTNYKGGLFCCQDNLQCKQIEGFQGSRRMVSLRYKISWVDWNIYQIPVKVYILDSTDKVRSNGSKILHDCLAEYTIPAGGGGDSPHVQKANIPMENGGYLIYGTAHMHSGVVNATLYGQDGRTLCTSTPKYGTGKEAGNEKGYLIGMSVCYPQPGSIKIHDGEILTLESRYKNEFRTGAMGHFYIYLAEELPQ*

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