SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20395 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:7112020-7113792 REVERSE LENGTH=223 | SoyBase | E_val: 6.00E-25 | ISS |
| PTHR22764 | Panther | RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_G7K8K3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING finger family protein n=1 Tax=Medicago truncatula RepID=G7K8K3_MEDTR | SoyBase | E_val: 4.00E-53 | ISS |
| UniRef100_UPI000233EDF1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EDF1 related cluster n=1 Tax=unknown RepID=UPI000233EDF1 | SoyBase | E_val: 3.00E-90 | ISS |
|
Glyma18g22723 not represented in the dataset |
Glyma18g22723 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g143800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g22723.1 sequence type=CDS gene model=Glyma18g22723 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGGTAGCCCTATTGAGGAGTTTATTAAATGGAAAACTATTTATGGAATGGATATGTCCAGCTGTTGCACAAGCCTATCATTGTCATATCAGTGCACATGCAACAACTTACAGAGAAGAATCAGATATTTACAATGACAATATTGTCAGGGAAATCACAGTCGAAGGGGTGGCTTGGAATATCATTCAAAAGCCTCCTGTTCAACAATTCAATTCCAGTAAAATGTTCAAATTATACAATGACTCTTGCTGCTCAATATGCTTCCAGGATTTTGAGGATGAAGAATTTGTGAGGACACTTCCAAAATGTGGCCACTTTTTTCACTTAGTTTGCATAGACAAATGGCTAGTCCAACAAGGATCATGCCCCATGTGTAAAATTTATGTTCCAGATTTATGA
>Glyma18g22723.1 sequence type=predicted peptide gene model=Glyma18g22723 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQVALLRSLLNGKLFMEWICPAVAQAYHCHISAHATTYREESDIYNDNIVREITVEGVAWNIIQKPPVQQFNSSKMFKLYNDSCCSICFQDFEDEEFVRTLPKCGHFFHLVCIDKWLVQQGSCPMCKIYVPDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
