Glyma18g22430 - SoyBase

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Report for Sequence Feature Glyma18g22430

Feature Type:	gene_model
Chromosome:	Gm18
Start:	25313564
stop:	25315368
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g22430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07840	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr3:2501893-2503475 REVERSE LENGTH=401	SoyBase	E_val: 3.00E-142	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004650	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity	SoyBase	N/A	ISS
PF00295	PFAM	Glycosyl hydrolases family 28	JGI		ISS
UniRef100_I1N1M5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N1M5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q40312	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase n=1 Tax=Medicago sativa RepID=PGLR_MEDSA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g22430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g22430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g143200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g22430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g22430

Limit To All Plant Sequences

>Glyma18g22430.1   sequence type=CDS   gene model=Glyma18g22430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTCGCTATAATCACAATATTGTTCTCTTTATTTCTTCTTGACTTTGGTTTTGCACAACAGGGGGATCTTGACATATCAAGATTTGGAGGAAAACCAAATACAAATATAGGCCAGGCTTTCTTAAGTGCCTGGACTCAAGCATGTGCATCACCAACTACTGTCAAAATTGTGATTCCAGCTGGCACATACCAAATGGGTGCAGTTGATGTCAAAGGTCCTTGCAAGGCTCCTATTGAGGTTCAAGTTGATGGAACAATTCAAGCACCTGCAAACCCAACTGACCTTAAGGCGGCTCATCAATGGTTTGTTGTTCAATATGTTAACTCTTTCACCCTGTCGGGTAAAGGTGTTTTTGATGGTCAAGGGGCAACTGCTTGGAAACAAAATGATTGTACAACAAACAAGGACTGCAAGATGCTTTGCATGAATTTTGGTTTTAATTTCCTCAATAATTCAATTGTCCGTGACATTACTTCCAAGGATAGCAAAAACTTTCATGTGAATGTTTTGGGGTGCAACAATTTCACATTTGATGGGTTTAAAGTTAGTGCACCAAAAGATAGCCCCAACACCGACGGGATCCACATTGGAAGATCCACAGATGTGAAGATTCTTAACACAAACATTGCTACCGGAGATGACTGTGTCTCATTGGGTGATGGTTGCAAAAATATAACTGTCCAAAATGTGAATTGTGGACCTGGTCATGGCATTAGTGTTGGAAGCCTTGGGAAGTACGATGCTGAAGAGCCCGTTGCAGGTCTTCTAGTTAAGAATTGCACTTTGAATGGAACAGATAATGGTGTGAGAATTAAGACTTGGCCTAACACGCCAGGAGCAATTACAATTACTGATATGCATTTTGAAGATCTTACCATGAATAATGTTATGAACCCTATCATCATAGACCAAGAGTATTGTCCTTGGAACCAATGCTCCAAACAGAATCCGTCAAAAATCAAGATAAGCAAGGTTTCCTTCAAGAACATTAAGGGCACTTCAGGAACTAAAGAAGGGGTGGTTCTTGTTTGTAGTAGTGGTGTACCATGTGAGGCTGTAGAGATGGCTGATATTGATCTGACATTCAACGGAAGTGCAGCAACAGCTAAATGTGCTAATGTCAAGCCCACAATAACAGGAAAAGCTCCTACTTGTGCAGCCTAG

Predicted protein sequences of Glyma18g22430

Limit To All Plant Sequences

>Glyma18g22430.1   sequence type=predicted peptide   gene model=Glyma18g22430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFAIITILFSLFLLDFGFAQQGDLDISRFGGKPNTNIGQAFLSAWTQACASPTTVKIVIPAGTYQMGAVDVKGPCKAPIEVQVDGTIQAPANPTDLKAAHQWFVVQYVNSFTLSGKGVFDGQGATAWKQNDCTTNKDCKMLCMNFGFNFLNNSIVRDITSKDSKNFHVNVLGCNNFTFDGFKVSAPKDSPNTDGIHIGRSTDVKILNTNIATGDDCVSLGDGCKNITVQNVNCGPGHGISVGSLGKYDAEEPVAGLLVKNCTLNGTDNGVRIKTWPNTPGAITITDMHFEDLTMNNVMNPIIIDQEYCPWNQCSKQNPSKIKISKVSFKNIKGTSGTKEGVVLVCSSGVPCEAVEMADIDLTFNGSAATAKCANVKPTITGKAPTCAA*

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