SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma18g22150): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma18g22150): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma18g22150

Feature Type:gene_model
Chromosome:Gm18
Start:24827952
stop:24831054
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g22150
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02530AT Annotation by Michelle Graham. TAIR10: chloroplast thylakoid lumen protein | chr4:1112335-1114005 REVERSE LENGTH=216 SoyBaseE_val: 6.00E-73ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0016117GO-bp Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009543GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0031977GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_G7JE46UniRef Annotation by Michelle Graham. Most informative UniRef hit: Thylakoid lumenal 16.5 kDa protein n=1 Tax=Medicago truncatula RepID=G7JE46_MEDTR SoyBaseE_val: 3.00E-90ISS
UniRef100_I1N1M2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N1M2_SOYBN SoyBaseE_val: 1.00E-158ISS

Expression Patterns of Glyma18g22150
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g22150 not represented in the dataset
Glyma18g22150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g22150 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g142800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g22150
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g22150
>Glyma18g22150.3   sequence type=transcript   gene model=Glyma18g22150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGATCAGATTACACAATCCAGCAACCTTATCCTCAGAAGGTTCAATCAAAATTGCCGTGTCTTTGAATTTTGCTGTCCAAAAATACCAGCAAAATAAGAAAATAAAATACAGAGAAAGATTGGAAAGAGAAATGGCAAAAAATATTCTCTCAACCTCAAACCCCATCCTACTACCTAGTTCATCACCATCCTCATCCTCATCCTCATTTGTAAAACCAATACATGTTTGCTCCAATCCGATAATCAAAAGCACTTCGAAGAGGGAATTAACTCTTTGCAAAGCAACACCACACTCTCCAATTGTTGTGACAAAGAGAGGCTTGTCCATCAGCTTCATCACCAGCTTTGTGCTTTCATTGGCTGGTAAGAAGAATGCAAATGCAGCAATACTCGAGGCAGATGATGATGAAGAACTCTTGGAGAAAGTAAAGCGTGACAGAAAGAAGAGACTTGAGAAGCAAGGGTATCTTCAAGATCTGGTGTACAAGCTAAGCGCAGTTGGTCAAGCACTTGAAAAGAATGATCTATCTGCTGCTGGTTCTGTCCTTGGAGGAAGCACCGATGCAGATTGGGTCCAAAGAGCTAATATAGCATTCAATAAACTGAGCTCCAGTTCAGAAGAGAAGACTGAGGTGGACGCATTCAATTCCTCATTAGCTTCACTAATTTCATCAGTTTCTAAGAAAGATGTTGAGTCCTCCAAAATTGCCTTTGTCTCTTCGGCCACTGCATTTGAGAAGTGGACTTCTATGACAGGCCTTGCTGCTCAGCTTAAGGGCCTTTGAGGGAAAACAATGTACAAAAGATATCATTTCATTTCATCATTTTGTGATCAATATAGAGAAATCCACTAATTTTCCTACCCATGTCACCTAATTGTTGTCTTGGAAGCAGTCTCTTCACAGCATTATCTAGTACTACTTCATAACGATCAATAAGCTCATTCTTTGTTAACAAAGCTTGGGTTACGAGTAGTGCCACTGAAATTTGTAATTTTGATGTCATTATTTAATGGCATGTTCTGTTATGTTGGCTCATCTACCTTGACAAATAAAGAACTTTTTAAGTTATTGTAGTAGGGTGATCTCTATATATATTAAATCTGTTTAGCAGGGAATTACCTGGCCTATTTTTTATTCATTGCTTTATATTTATTTTGTTTTAAATTTTGA

>Glyma18g22150.4   sequence type=transcript   gene model=Glyma18g22150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGATCAGATTACACAATCCAGCAACCTTATCCTCAGAAGGTTCAATCAAAATTGCCGTGTCTTTGAATTTTGCTGTCCAAAAATACCAGCAAAATAAGAAAATAAAATACAGAGAAAGATTGGAAAGAGAAATGGCAAAAAATATTCTCTCAACCTCAAACCCCATCCTACTACCTAGTTCATCACCATCCTCATCCTCATCCTCATTTGTAAAACCAATACATGTTTGCTCCAATCCGATAATCAAAAGCACTTCGAAGAGGGAATTAACTCTTTGCAAAGCAACACCACACTCTCCAATTGTTGTGACAAAGAGAGGCTTGTCCATCAGCTTCATCACCAGCTTTGTGCTTTCATTGGCTGGTAAGAAGAATGCAAATGCAGCAATACTCGAGGCAGATGATGATGAAGAACTCTTGGAGAAAGTAAAGCGTGACAGAAAGAAGAGACTTGAGAAGCAAGGTGTGATCAGTTCTTCCAAACAAGAAACAGGGTATCTTCAAGATCTGGTGTACAAGCTAAGCGCAGTTGGTCAAGCACTTGAAAAGAATGATCTATCTGCTGCTGGTTCTGTCCTTGGAGGAAGCACCGATGCAGATTGGGTCCAAAGAGCTAATATAGCATTCAATAAATTTCTAAGAAAGATGTTGAGTCCTCCAAAATTGCCTTTGTCTCTTCGGCCACTGCATTTGAGAAGTGGACTTCTATGACAGGCCTTGCTGCTCAGCTTAAGGGCCTTTGAGGGAAAACAATGTACAAAAGATATCATTTCATTTCATCATTTTGTGATCAATATAGAGAAATCCACTAATTTTCCTACCCATGTCACCTAATTGTTGTCTTGGAAGCAGTCTCTTCACAGCATTATCTAGTACTACTTCATAACGATCAATAAGCTCATTCTTTGTTAACAAAGCTTGGGTTACGAGTAGTGCCACTGAAATTTGTAATTTTGATGTCATTATTTAATGGCATGTTCTGTTATGTTGGCTCATCTACCTTGACAAATAAAGAACTTTTTAAGTTATTGTAGTAGGGTGATCTCTATATATATTAAATCTGTTTAGCAGGGAATTACCTGGCCTATTTTTTATTCATTGCTTTATATTTATTTTGTTTTAAATTTTGA

>Glyma18g22150.5   sequence type=transcript   gene model=Glyma18g22150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGATCAGATTACACAATCCAGCAACCTTATCCTCAGAAGGTTCAATCAAAATTGCCGTGTCTTTGAATTTTGCTGTCCAAAAATACCAGCAAAATAAGAAAATAAAATACAGAGAAAGATTGGAAAGAGAAATGGCAAAAAATATTCTCTCAACCTCAAACCCCATCCTACTACCTAGTTCATCACCATCCTCATCCTCATCCTCATTTGTAAAACCAATACATGTTTGCTCCAATCCGATAATCAAAAGCACTTCGAAGAGGGAATTAACTCTTTGCAAAGCAACACCACACTCTCCAATTGTTGTGACAAAGAGAGGCTTGTCCATCAGCTTCATCACCAGCTTTGTGCTTTCATTGGCTGGTAAGAAGAATGCAAATGCAGCAATACTCGAGGCAGATGATGATGAAGAACTCTTGGAGAAAGTAAAGCGTGACAGAAAGAAGAGACTTGAGAAGCAAGGTGTGATCAGTTCTTCCAAACAAGAAACAGGGTATCTTCAAGATCTGGTGTACAAGCTAAGCGCAGTTGGTCAAGCACTTGAAAAGAATGATCTATCTGCTGCTGGTTCTGTCCTTGGAGGAAGCACCGATGCAGATTGGGTCCAAAGAGCTAATATAGCATTCAATAAAGTAAGTTTGGTTCCTGAATATGAGTGAAATCACAGTATTCATTCGGAATTATACTGTAATTAAATCTTTTATCCTGAATTCTTGGAATATAAAATAAAAAAGCCTACTCTAGATTATGGTGATGGCCATAGCTACTAGGTTCGCTCAGAAACTATATGAACCATGAAAAATTACCTGTGTACCAGTGTATTGCAGTGTAAAAAGCTGTTAACATCATCATAATTTCAGGAAATGACAAACTATGTACCAATCACTCTATTAATCAGGTAACTGGTGGTAGTTTATTTCCTTGATATTAAATTCTAGTATTGCTGCATCAGATTTTCATTTTTCAGAATGTGAGAAAATTGTTTCTTTCTATTTC
Coding sequences of Glyma18g22150
>Glyma18g22150.2   sequence type=CDS   gene model=Glyma18g22150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAAATATTCTCTCAACCTCAAACCCCATCCTACTACCTAGTTCATCACCATCCTCATCCTCATCCTCATTTGTAAAACCAATACATGTTTGCTCCAATCCGATAATCAAAAGCACTTCGAAGAGGGAATTAACTCTTTGCAAAGCAACACCACACTCTCCAATTGTTGTGACAAAGAGAGGCTTGTCCATCAGCTTCATCACCAGCTTTGTGCTTTCATTGGCTGGTAAGAAGAATGCAAATGCAGCAATACTCGAGGCAGATGATGATGAAGAACTCTTGGAGAAAGTAAAGCGTGACAGAAAGAAGAGACTTGAGAAGCAAGGTGTGATCAGTTCTTCCAAACAAGAAACAGGGTATCTTCAAGATCTGGTGTACAAGCTAAGCGCAGTTGGTCAAGCACTTGAAAAGAATGATCTATCTGCTGCTGGTTCTGTCCTTGGAGGAAGCACCGATGCAGATTGGGTCCAAAGAGCTAATATAGCATTCAATAAACTGAGCTCCAGTTCAGAAGAGAAGACTGAGGTGGACGCATTCAATTCCTCATTAGCTTCACTAATTTCATCAGTTTCTAAGAAAGATGTTGAGTCCTCCAAAATTGCCTTTGTCTCTTCGGCCACTGCATTTGAGAAGTGGACTTCTATGACAGGCCTTGCTGCTCAGCTTAAGGGCCTTTGA

>Glyma18g22150.3   sequence type=CDS   gene model=Glyma18g22150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAAATATTCTCTCAACCTCAAACCCCATCCTACTACCTAGTTCATCACCATCCTCATCCTCATCCTCATTTGTAAAACCAATACATGTTTGCTCCAATCCGATAATCAAAAGCACTTCGAAGAGGGAATTAACTCTTTGCAAAGCAACACCACACTCTCCAATTGTTGTGACAAAGAGAGGCTTGTCCATCAGCTTCATCACCAGCTTTGTGCTTTCATTGGCTGGTAAGAAGAATGCAAATGCAGCAATACTCGAGGCAGATGATGATGAAGAACTCTTGGAGAAAGTAAAGCGTGACAGAAAGAAGAGACTTGAGAAGCAAGGGTATCTTCAAGATCTGGTGTACAAGCTAAGCGCAGTTGGTCAAGCACTTGAAAAGAATGATCTATCTGCTGCTGGTTCTGTCCTTGGAGGAAGCACCGATGCAGATTGGGTCCAAAGAGCTAATATAGCATTCAATAAACTGAGCTCCAGTTCAGAAGAGAAGACTGAGGTGGACGCATTCAATTCCTCATTAGCTTCACTAATTTCATCAGTTTCTAAGAAAGATGTTGAGTCCTCCAAAATTGCCTTTGTCTCTTCGGCCACTGCATTTGAGAAGTGGACTTCTATGACAGGCCTTGCTGCTCAGCTTAAGGGCCTTTGA

>Glyma18g22150.4   sequence type=CDS   gene model=Glyma18g22150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAAATATTCTCTCAACCTCAAACCCCATCCTACTACCTAGTTCATCACCATCCTCATCCTCATCCTCATTTGTAAAACCAATACATGTTTGCTCCAATCCGATAATCAAAAGCACTTCGAAGAGGGAATTAACTCTTTGCAAAGCAACACCACACTCTCCAATTGTTGTGACAAAGAGAGGCTTGTCCATCAGCTTCATCACCAGCTTTGTGCTTTCATTGGCTGGTAAGAAGAATGCAAATGCAGCAATACTCGAGGCAGATGATGATGAAGAACTCTTGGAGAAAGTAAAGCGTGACAGAAAGAAGAGACTTGAGAAGCAAGGTGTGATCAGTTCTTCCAAACAAGAAACAGGGTATCTTCAAGATCTGGTGTACAAGCTAAGCGCAGTTGGTCAAGCACTTGAAAAGAATGATCTATCTGCTGCTGGTTCTGTCCTTGGAGGAAGCACCGATGCAGATTGGGTCCAAAGAGCTAATATAGCATTCAATAAATTTCTAAGAAAGATGTTGAGTCCTCCAAAATTGCCTTTGTCTCTTCGGCCACTGCATTTGAGAAGTGGACTTCTATGA

>Glyma18g22150.5   sequence type=CDS   gene model=Glyma18g22150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAAATATTCTCTCAACCTCAAACCCCATCCTACTACCTAGTTCATCACCATCCTCATCCTCATCCTCATTTGTAAAACCAATACATGTTTGCTCCAATCCGATAATCAAAAGCACTTCGAAGAGGGAATTAACTCTTTGCAAAGCAACACCACACTCTCCAATTGTTGTGACAAAGAGAGGCTTGTCCATCAGCTTCATCACCAGCTTTGTGCTTTCATTGGCTGGTAAGAAGAATGCAAATGCAGCAATACTCGAGGCAGATGATGATGAAGAACTCTTGGAGAAAGTAAAGCGTGACAGAAAGAAGAGACTTGAGAAGCAAGGTGTGATCAGTTCTTCCAAACAAGAAACAGGGTATCTTCAAGATCTGGTGTACAAGCTAAGCGCAGTTGGTCAAGCACTTGAAAAGAATGATCTATCTGCTGCTGGTTCTGTCCTTGGAGGAAGCACCGATGCAGATTGGGTCCAAAGAGCTAATATAGCATTCAATAAAGTAAGTTTGGTTCCTGAATATGAGTGA
Predicted protein sequences of Glyma18g22150
>Glyma18g22150.2   sequence type=predicted peptide   gene model=Glyma18g22150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKNILSTSNPILLPSSSPSSSSSSFVKPIHVCSNPIIKSTSKRELTLCKATPHSPIVVTKRGLSISFITSFVLSLAGKKNANAAILEADDDEELLEKVKRDRKKRLEKQGVISSSKQETGYLQDLVYKLSAVGQALEKNDLSAAGSVLGGSTDADWVQRANIAFNKLSSSSEEKTEVDAFNSSLASLISSVSKKDVESSKIAFVSSATAFEKWTSMTGLAAQLKGL*

>Glyma18g22150.3   sequence type=predicted peptide   gene model=Glyma18g22150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKNILSTSNPILLPSSSPSSSSSSFVKPIHVCSNPIIKSTSKRELTLCKATPHSPIVVTKRGLSISFITSFVLSLAGKKNANAAILEADDDEELLEKVKRDRKKRLEKQGYLQDLVYKLSAVGQALEKNDLSAAGSVLGGSTDADWVQRANIAFNKLSSSSEEKTEVDAFNSSLASLISSVSKKDVESSKIAFVSSATAFEKWTSMTGLAAQLKGL*

>Glyma18g22150.4   sequence type=predicted peptide   gene model=Glyma18g22150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKNILSTSNPILLPSSSPSSSSSSFVKPIHVCSNPIIKSTSKRELTLCKATPHSPIVVTKRGLSISFITSFVLSLAGKKNANAAILEADDDEELLEKVKRDRKKRLEKQGVISSSKQETGYLQDLVYKLSAVGQALEKNDLSAAGSVLGGSTDADWVQRANIAFNKFLRKMLSPPKLPLSLRPLHLRSGLL*

>Glyma18g22150.5   sequence type=predicted peptide   gene model=Glyma18g22150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKNILSTSNPILLPSSSPSSSSSSFVKPIHVCSNPIIKSTSKRELTLCKATPHSPIVVTKRGLSISFITSFVLSLAGKKNANAAILEADDDEELLEKVKRDRKKRLEKQGVISSSKQETGYLQDLVYKLSAVGQALEKNDLSAAGSVLGGSTDADWVQRANIAFNKVSLVPEYE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo