Glyma18g21870 - SoyBase

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Report for Sequence Feature Glyma18g21870

Feature Type:	gene_model
Chromosome:	Gm18
Start:	24645144
stop:	24646447
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g21870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G63180	AT	Annotation by Michelle Graham. TAIR10: UDP-D-glucose/UDP-D-galactose 4-epimerase 3 \| chr1:23427559-23429384 REVERSE LENGTH=351	SoyBase	E_val: 1.00E-37	ISS
GO:0006012	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactose metabolic process	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003978	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucose 4-epimerase activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF39	Panther	CDP-3, 6-DIDEOXY-D-GLYCERO-L-GLYCERO-4-HEXULOSE-4-REDUCTASE	JGI		ISS
UniRef100_C6THZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6THZ0_SOYBN	SoyBase	E_val: 3.00E-42	ISS
UniRef100_O65780	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose 4-epimerase GEPI42 n=1 Tax=Cyamopsis tetragonoloba RepID=GALE1_CYATE	SoyBase	E_val: 9.00E-41	ISS

Expression Patterns of Glyma18g21870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g21870 not represented in the dataset	Glyma18g21870 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g21870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g145700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g21870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g21870

Limit To All Plant Sequences

>Glyma18g21870.2   sequence type=transcript   gene model=Glyma18g21870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGAGACCTATTACAAGCTCCTAATGGAGGCCCTACTTAGCAAACAACAAGGTTCTGTAGAATATAGGGTGGGAATGGAACTTACCAAATAGTTTGGTAATCTTGGAACTGGGCATGGCACATCCGTGCTTGAAATGGTTGCTGCCTTTGAAAAAGCTTCCGGCAAGAAAATTCCATTAAAAATGTGTCCCAGAAGACCTGGGGATGCTACTGCTGTATATGCATCTACGGACAAGGCTGAGAAAGAACTTGGTTGGAAGGCAAAATACAGTATAGAGGAAATGTGCAGGGATTTGTGGAATTGGACAAGCAAAAATCCATGGGGATACCAGGGGAAGCATTAAATGAAATTCGGTGCTCGATCGGTTGTACTTGGAGGAGGTCTTCCTCCACCATATCATATCATCTCCACTCCAGATATAATATGTTGATGTTTCTTTTGTTGATACAATTGATTGGTTGATTGATTCTTTACACTACATATGTTGTTGGCCTAAATAATTGTCTGATTATGAATTTTCATATTGTAGAAAGGACCACTTTGATGAGTTATATATGAGAATTAATTTAAATGATTTCCCACAAAAAAAA

Coding sequences of Glyma18g21870

Limit To All Plant Sequences

>Glyma18g21870.1   sequence type=CDS   gene model=Glyma18g21870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCTGCCTTTGAAAAAGCTTCCGGCAAGAAAATTCCATTAAAAATGTGTCCCAGAAGACCTGGGGATGCTACTGCTGTATATGCATCTACGGACAAGGCTGAGAAAGAACTTGGTTGGAAGGCAAAATACAGTATAGAGGAAATGTGCAGGGATTTGTGGAATTGGACAAGCAAAAATCCATGGGGATACCAGGGGAAGCATTAA

>Glyma18g21870.2   sequence type=CDS   gene model=Glyma18g21870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCTGCCTTTGAAAAAGCTTCCGGCAAGAAAATTCCATTAAAAATGTGTCCCAGAAGACCTGGGGATGCTACTGCTGTATATGCATCTACGGACAAGGCTGAGAAAGAACTTGGTTGGAAGGCAAAATACAGTATAGAGGAAATGTGCAGGGATTTGTGGAATTGGACAAGCAAAAATCCATGGGGATACCAGGGGAAGCATTAA

Predicted protein sequences of Glyma18g21870

Limit To All Plant Sequences

>Glyma18g21870.1   sequence type=predicted peptide   gene model=Glyma18g21870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAAFEKASGKKIPLKMCPRRPGDATAVYASTDKAEKELGWKAKYSIEEMCRDLWNWTSKNPWGYQGKH*

>Glyma18g21870.2   sequence type=predicted peptide   gene model=Glyma18g21870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAAFEKASGKKIPLKMCPRRPGDATAVYASTDKAEKELGWKAKYSIEEMCRDLWNWTSKNPWGYQGKH*

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