Report for Sequence Feature Glyma18g20870
Feature Type: gene_model
Chromosome: Gm18
Start: 23533139
stop: 23539548
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g20870
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G26570 AT
Annotation by Michelle Graham. TAIR10: phosphate transporter 2;1 | chr3:9756416-9758413 FORWARD LENGTH=587
SoyBase E_val: 0 ISS
GO:0006817 GO-bp
Annotation by Michelle Graham. GO Biological Process: phosphate ion transport
SoyBase N/A ISS
GO:0009556 GO-bp
Annotation by Michelle Graham. GO Biological Process: microsporogenesis
SoyBase N/A ISS
GO:0016117 GO-bp
Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process
SoyBase N/A ISS
GO:0052543 GO-bp
Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005315 GO-mf
Annotation by Michelle Graham. GO Molecular Function: inorganic phosphate transmembrane transporter activity
SoyBase N/A ISS
GO:0009673 GO-mf
Annotation by Michelle Graham. GO Molecular Function: low affinity phosphate transmembrane transporter activity
SoyBase N/A ISS
KOG2493
KOG
Na+/Pi symporter
JGI ISS
PTHR11101 Panther
PHOSPHATE TRANSPORTER
JGI ISS
PTHR11101:SF8 Panther
CHLOROPLAST PHOSPHATE TRANSPORTER
JGI ISS
PF01384 PFAM
Phosphate transporter family
JGI ISS
UniRef100_I1KXB0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXB0_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8GTR3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Inorganic phosphate transporter 2-1 n=1 Tax=Medicago truncatula RepID=Q8GTR3_MEDTR
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g20870
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g20870
Paralog Evidence Comments
Glyma08g38840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g20870 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g144100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g20870
Coding sequences of Glyma18g20870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g20870.2 sequence type=CDS gene model=Glyma18g20870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATCCCTCTTGTCGCTTCTCTTCAACTAAACACACCCCTTTCCTTCACAACTCCAAACCCACTTCCCCTTTCTTCCTTAGACACTCTCACTCTCATTCCCACCAAGTGAAACCTTTTCCCTTATCCCCACCAATAACAACAACAACAACAGCAAAGCCTTATCCTTTAAACATTCTAAGGCTCAGAAACATCAAACTCTCTCACCCTTTGGCCACGCTATCATCTTTCGCGGAGGGAGAAGAAGAGAATCAGAAGGAGGGAGCAGAGTCACCACCGAACAACGATGAATTGGGAGGAATTGCGAAGGCCTTCAACATATCGTCTCGGACGGCCTCTGCCATATCGATATGCATGGCATTGGCGGTTCTCACTTTTCCGCTGTTCATGACTTCTTTGGGGCAAGGCATGGCTCTGAAGACGAAGGTGCTCTCTTATGCGACGCTGCTGTTCGGGTTCTACATGGCGTGGAACATTGGGGCGAATGACGTGGCAAATGCCATGGGGACCTCCGTGGGGTCTGGCGCCCTCACGCTCCGGCAGGCCGTGCTGACCGCCGCGGTGCTCGAATTCTCCGGGGCGCTGATGATGGGGACGCACGTGACCAGCACGATGCAGAAGGGGATTCTCGTCGCCAACGTGTTCAATGGAAAGGATTCTTTGCTCTTCGCCGGGTTGCTCTCGTCTCTTGCCGCTGCTGGTACTTGGTTACAGTTTGCATCATATTATGGTTGGCCAGTATCTACTACACATTGTATAGTGGGAGCAATGGTGGGGTTTGGTCTAGCTTATGGAGGTGCCGGAGCTGTTTTCTGGGGTTCACTGGCCAGGGTGATCTCTTCGTGGGTTGTCTCACCACTAATGGGAGCAGCTGTGTCATTTCTTGTCTATAAATGCATCCGAAGGTTTGTGTACAGTGCACCTAACCCCGGCCTAGCAGCAGCTGCTGCAGCACCAATTGCTGTATTTCTGGGTGTAACTGGGATTTCATTTGTTGCCTTCCCTCTTAGCAAGAATTTCCCTTTAGCTCTGGCCCAAGCTTTAGCCTGTGGAACTGTTGGTGCTTTTCTGGTAGACAGAATCATCAGAAAACAGCTTGGACATCTTCTTGTCAAGTCAAATACACCAGAGCCTGAGCCAAAAGAAGACTCTGTCCACCACCACAATATAGGATTCCTCGATGATGTTGCAGGCCCAAAGGGTGCTCAACTGGAAATAGTTTATGGAGTCTTTGGGTACATGCAGGTCCTCTCAGCATGTTTCATGTCATTTGCTCATGGCGGAAACGATGTCTCCAATGCCATAGGTCCATTGGCGGGTGCGCTAGCTATTCTTCAAGGTGGTGCCGCAGGAACTGAGATTGTGATTCCAACTGATGTTCTTGCTTGGGGAGGATTTGGCATCGTTGCAGGGCTAATGATGTGGGGTTATAGAGTGATAGCTACAATAGGAAAGAAGATAACAGAACTTACACCAACTAGAGGATTTGCAGCTGAGTTTGCTGCTGCCTCTGTGGTTCTGTTTGCTTCAAAGCTGGGACTACCCATCTCTGCAACCCACACTCTAGTCGGTGCAGTAATGGGCGTTGGATTTGCAAGAGGACTTAACAGTGTTAGATCAGAAACTGTGAAGGAGATTGTGGCTTCATGGGTGGTTACTATTCCAGTTGGAGCTACTCTATCAGTCCTCTACACATGGATCTTGACTAAGATTTTGTCCTATATTTTATGA
Predicted protein sequences of Glyma18g20870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g20870.2 sequence type=predicted peptide gene model=Glyma18g20870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNPSCRFSSTKHTPFLHNSKPTSPFFLRHSHSHSHQVKPFPLSPPITTTTTAKPYPLNILRLRNIKLSHPLATLSSFAEGEEENQKEGAESPPNNDELGGIAKAFNISSRTASAISICMALAVLTFPLFMTSLGQGMALKTKVLSYATLLFGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALMMGTHVTSTMQKGILVANVFNGKDSLLFAGLLSSLAAAGTWLQFASYYGWPVSTTHCIVGAMVGFGLAYGGAGAVFWGSLARVISSWVVSPLMGAAVSFLVYKCIRRFVYSAPNPGLAAAAAAPIAVFLGVTGISFVAFPLSKNFPLALAQALACGTVGAFLVDRIIRKQLGHLLVKSNTPEPEPKEDSVHHHNIGFLDDVAGPKGAQLEIVYGVFGYMQVLSACFMSFAHGGNDVSNAIGPLAGALAILQGGAAGTEIVIPTDVLAWGGFGIVAGLMMWGYRVIATIGKKITELTPTRGFAAEFAAASVVLFASKLGLPISATHTLVGAVMGVGFARGLNSVRSETVKEIVASWVVTIPVGATLSVLYTWILTKILSYIL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
