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Report for Sequence Feature Glyma18g20830

Feature Type:gene_model
Chromosome:Gm18
Start:23391133
stop:23391681
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g20830
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G34440AT Annotation by Michelle Graham. TAIR10: AGAMOUS-like 29 | chr2:14526950-14527468 FORWARD LENGTH=172 SoyBaseE_val: 3.00E-34ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
KOG0014 KOG MADS box transcription factor JGI ISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI ISS
UniRef100_G7JGR6UniRef Annotation by Michelle Graham. Most informative UniRef hit: MADS-box transcription factor n=1 Tax=Medicago truncatula RepID=G7JGR6_MEDTR SoyBaseE_val: 5.00E-59ISS
UniRef100_UPI000233EC71UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EC71 related cluster n=1 Tax=unknown RepID=UPI000233EC71 SoyBaseE_val: 2.00E-129ISS

Expression Patterns of Glyma18g20830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g20830
ParalogEvidenceComments
Glyma08g38880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g20830 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g143800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g20830
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g20830
>Glyma18g20830.1   sequence type=CDS   gene model=Glyma18g20830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGTCGTAAGATTCAAATTGCAGTGGTGAAAGACCCTAATACAAGGCAAGTAACATTTTCCAAGCGTCGAACAGGTTTGTTCAAAAAGGCGAATGAATTGTCCATCTTGTGTGGAGTAGAAATTGCTATCGTTGTGTTCTCTATTGGAAACAAACCTTACTCTTTTGGGCACCCAAGTGTTGATGTTGTTGTGACTAAATTTCTTCAACATGCGACCAATTCAAATGATGCCCTTGGAAGCAACAATTCTTCAAATGAAGTTGTTGGTGACATGGAAAGGCTGAATCAACAATTATCTGATCTTCAGACCCAAATACTCGAGGAGGAAATTAAGGGTACAAAGCATGATGAGAGACTAAAACAACATGAAGTGACACAAGTCTTTCAATATAAAGAATTGCAAGGTTTGTGTTTAGAGCTCCAACGTAAGGTGAAGGACTATGTTGATGAAATTGAGGTGTCGGAGTGTATGTTGCTTCTTGCACAAGAACCTGTAGTAGGAGTAAGAAAAGAAGTAATTACGAAGAAAAGAAGAAAGAATTGA
Predicted protein sequences of Glyma18g20830
>Glyma18g20830.1   sequence type=predicted peptide   gene model=Glyma18g20830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRRKIQIAVVKDPNTRQVTFSKRRTGLFKKANELSILCGVEIAIVVFSIGNKPYSFGHPSVDVVVTKFLQHATNSNDALGSNNSSNEVVGDMERLNQQLSDLQTQILEEEIKGTKHDERLKQHEVTQVFQYKELQGLCLELQRKVKDYVDEIEVSECMLLLAQEPVVGVRKEVITKKRRKN*






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