Glyma18g20820 - SoyBase

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Report for Sequence Feature Glyma18g20820

Feature Type:	gene_model
Chromosome:	Gm18
Start:	23290240
stop:	23305385
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g20820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G26590	AT	Annotation by Michelle Graham. TAIR10: MATE efflux family protein \| chr3:9761927-9765259 REVERSE LENGTH=500	SoyBase	E_val: 0	ISS
GO:0006855	GO-bp	Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015238	GO-mf	Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antiporter activity	SoyBase	N/A	ISS
KOG1347	KOG	Uncharacterized membrane protein, predicted efflux pump	JGI		ISS
PTHR11206	Panther	MULTIDRUG RESISTANCE PUMP	JGI		ISS
PTHR11206:SF46	Panther	MULTI ANTIMICROBIAL EXTRUSION (MATE) FAMILY TRANSPORTER	JGI		ISS
PF01554	PFAM	MatE	JGI		ISS
UniRef100_G7LJC9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein TRANSPARENT TESTA n=1 Tax=Medicago truncatula RepID=G7LJC9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EC70	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EC70 related cluster n=1 Tax=unknown RepID=UPI000233EC70	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g20820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g20820

Paralog	Evidence	Comments
Glyma08g38950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g20820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g143700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g20820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g20820

Limit To All Plant Sequences

>Glyma18g20820.2   sequence type=transcript   gene model=Glyma18g20820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCAAAGGCTAAAACTATCTTTTAAATGACATGAACAATACTTTTTCTTACATGAGAACCGGACAATTGCGAATAAAATATTTTATAGCAACTATGGCGTTTCAACTATAACCCTAAACTCTGGAAAAAAAGTTATAACCCTAAACTTTAAAATAATTTTATTTTGTCACTATGTTTTTTTATCTACTTTCCGTGACATTATGATTGATTTTTCTCCCTATCCTTTTTACTTTTATCTCCTTTTCCGAACCGATGACGGAGTGTGGCATTACATTGGGTAACAGTAAAAACCTGCTCTGAAGGCCGGAACTTTTTCTTTATAAAGTTGTTCTAGAATTTTCAATTTTTTCGTATCTCTGATTCATATCACGAATTCACGATGGAGGACCATGAGGACCATACTCACCCACTTCTCACGCCGCGACACCACACACCGGACCCCGCCGTCGTCTTCACGGCGAAATCCGATGACATCGCTCCGATCGCCGGCGCCGGCGACTTCGCCAGAGAGTTCTTCGCCGAGTCGAAGAAGCTCTGGTACCTCGCCGGCCCCGCCATCTTCACCTCCGTCTGCCAGTACTCCCTCGGCGCCGTCACCCAAGTCTTCTCCGGCCACGTCAGCACCCTCGCCCTCGCCGCCATCTCCATTGAAAACTCCGTCATCGCCGGCTTCTGCCTTGGCATCACTTTTGGAATGGGAAGCGCGTTGGAAACGCTATGTGGACAAGCGTACGGAGCGGGGCAAGTGCACATGCTGGGCGTGTACATGCAGCGCTCGTGGGTGATCCTGAACGCCACCGCGATCCTGCTGACGCTCCTCTACATCTTCGCGGCGCCGCTGCTGCGGGCGATAGGGCAGACGGAGGCGATTTCGGCGGCGGCGGGGGATTTCGCGGTGTGGATGATCCCGCAGCTGTTCGCGTACGCGGTGAACTACCCGGCGCAGAAGTTCCTGCAGGCGCAGAGCAGGATCATGGTGATGGCGTGGATTGCGGCGGCGGCGCTGGTGCTGCACACCGTGTTCAGCTGGCTGCTCATGCTGAAGCTCCGGTGGGGGCTCGTCGGCGCTGCCGTGGTGCTGAACGCGTCGTGGTGGTTCATCGACCTTGCGCAGCTCGTTTATATAATGGGTGGGGCCTGCGGGGAGGCCTGGTCTGGCTTTACCTTCAAAGCCTTTCACAATCTTTGGGGCTTTGTTCGTCTCTCTCTTGCCTCTGCTGTCATGCTCTGCCTTGAAGTGTGGTATTTTATGGCCCTCATCCTCTTCGCTGGATATTTAAAGAATGCAGAGGTTTCGGTCGATGCCTTGTCCATCTGCATGAACATATTGGGATGGACCATCATGGTATCCTTTGGAATGAACGCAGCCGTAAGTGTGAGGGTGTCAAATGAACTAGGAGCATGTCACCCAAGAACAGCAAAGTTTTCACTTCTTGTTGCTGTGATTACTTCAACTCTGATCGGTGTCATGCTCTCGATGGTGCTGATAATCTTCCGGAACCAGTACCCTTTCTTGTTTTCAAATGATTCAGAAGTGAGAAAGATTGTGGTAGAGCTCACGCCCATGTTGGCCCTTTGCATTGTCATCAACAACGTGCAACCCGTTCTCTCAGGTGTTGCTGTTGGCGCAGGGTGGCAGGCTGTGGTTGCTTACGTGAATATTGCTTGTTACTACTTTTTCGGTATTCCTCTGGGTCTTATTTTAGGGTACAAGCTTGACAAGGGGGTCATGGGGATTTGGTCTGGAATGTTGTTAGGAACTATCTTACAAACTTGTGTTTTATTCTTCATGGTCTATAGAACAGATTGGAATAAAGAGGCATCCCTTGCGGAAGATAGAATAAAGCAGTGGGGTGGGCATGAAGATTCAAAAACGCATGCTATAGCGAAGAATGATCAAGAAACATGAAAATTTGAAAATTCTAGAAGCAGGGTGTACCTTCTTTTATTGATTTTTTTTCAAGCCATGACTTAGTTGTTTGCTGTTTCTCTTTCCCATGGATCAGGTGGACGATCCTGCATTCATTTTTTTCCTTAAAAAATAAATGAGTAATGTTATGTTTTTCTTAATAATTCTTCTAGTGTTTTAGTATAATATTAGTATTGAAGAAAAAAGTGGATAAATTTAATATCTTAAGAATATAAGCGACATCTAATTCTTTCTTCATTTAATAAATTG

Coding sequences of Glyma18g20820

Limit To All Plant Sequences

>Glyma18g20820.1   sequence type=CDS   gene model=Glyma18g20820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACCATGAGGACCATACTCACCCACTTCTCACGCCGCGACACCACACACCGGACCCCGCCGTCGTCTTCACGGCGAAATCCGATGACATCGCTCCGATCGCCGGCGCCGGCGACTTCGCCAGAGAGTTCTTCGCCGAGTCGAAGAAGCTCTGGTACCTCGCCGGCCCCGCCATCTTCACCTCCGTCTGCCAGTACTCCCTCGGCGCCGTCACCCAAGTCTTCTCCGGCCACGTCAGCACCCTCGCCCTCGCCGCCATCTCCATTGAAAACTCCGTCATCGCCGGCTTCTGCCTTGGCATCACTTTTGGAATGGGAAGCGCGTTGGAAACGCTATGTGGACAAGCGTACGGAGCGGGGCAAGTGCACATGCTGGGCGTGTACATGCAGCGCTCGTGGGTGATCCTGAACGCCACCGCGATCCTGCTGACGCTCCTCTACATCTTCGCGGCGCCGCTGCTGCGGGCGATAGGGCAGACGGAGGCGATTTCGGCGGCGGCGGGGGATTTCGCGGTGTGGATGATCCCGCAGCTGTTCGCGTACGCGGTGAACTACCCGGCGCAGAAGTTCCTGCAGGCGCAGAGCAGGATCATGGTGATGGCGTGGATTGCGGCGGCGGCGCTGGTGCTGCACACCGTGTTCAGCTGGCTGCTCATGCTGAAGCTCCGGTGGGGGCTCGTCGGCGCTGCCGTGGTGCTGAACGCGTCGTGGTGGTTCATCGACCTTGCGCAGCTCGTTTATATAATGGGTGGGGCCTGCGGGGAGGCCTGGTCTGGCTTTACCTTCAAAGCCTTTCACAATCTTTGGGGCTTTGTTCGTCTCTCTCTTGCCTCTGCTGTCATGCTCTGCCTTGAAGTGTGGTATTTTATGGCCCTCATCCTCTTCGCTGGATATTTAAAGAATGCAGAGGTTTCGGTCGATGCCTTGTCCATCTGCATGAACATATTGGGATGGACCATCATGGTATCCTTTGGAATGAACGCAGCCGTAAGTGTGAGGGTGTCAAATGAACTAGGAGCATGTCACCCAAGAACAGCAAAGTTTTCACTTCTTGTTGCTGTGATTACTTCAACTCTGATCGGTGTCATGCTCTCGATGGTGCTGATAATCTTCCGGAACCAGTACCCTTTCTTGTTTTCAAATGATTCAGAAGTGAGAAAGATTGTGGTAGAGCTCACGCCCATGTTGGCCCTTTGCATTGTCATCAACAACGTGCAACCCGTTCTCTCAGGTGTTGCTGTTGGCGCAGGGTGGCAGGCTGTGGTTGCTTACGTGAATATTGCTTGTTACTACTTTTTCGGTATTCCTCTGGGTCTTATTTTAGGGTACAAGCTTGACAAGGGGGTCATGGTGAGTCATTTTCTCTTTATCTTTCTTTCATTCACAAATAATTAA

>Glyma18g20820.2   sequence type=CDS   gene model=Glyma18g20820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACCATGAGGACCATACTCACCCACTTCTCACGCCGCGACACCACACACCGGACCCCGCCGTCGTCTTCACGGCGAAATCCGATGACATCGCTCCGATCGCCGGCGCCGGCGACTTCGCCAGAGAGTTCTTCGCCGAGTCGAAGAAGCTCTGGTACCTCGCCGGCCCCGCCATCTTCACCTCCGTCTGCCAGTACTCCCTCGGCGCCGTCACCCAAGTCTTCTCCGGCCACGTCAGCACCCTCGCCCTCGCCGCCATCTCCATTGAAAACTCCGTCATCGCCGGCTTCTGCCTTGGCATCACTTTTGGAATGGGAAGCGCGTTGGAAACGCTATGTGGACAAGCGTACGGAGCGGGGCAAGTGCACATGCTGGGCGTGTACATGCAGCGCTCGTGGGTGATCCTGAACGCCACCGCGATCCTGCTGACGCTCCTCTACATCTTCGCGGCGCCGCTGCTGCGGGCGATAGGGCAGACGGAGGCGATTTCGGCGGCGGCGGGGGATTTCGCGGTGTGGATGATCCCGCAGCTGTTCGCGTACGCGGTGAACTACCCGGCGCAGAAGTTCCTGCAGGCGCAGAGCAGGATCATGGTGATGGCGTGGATTGCGGCGGCGGCGCTGGTGCTGCACACCGTGTTCAGCTGGCTGCTCATGCTGAAGCTCCGGTGGGGGCTCGTCGGCGCTGCCGTGGTGCTGAACGCGTCGTGGTGGTTCATCGACCTTGCGCAGCTCGTTTATATAATGGGTGGGGCCTGCGGGGAGGCCTGGTCTGGCTTTACCTTCAAAGCCTTTCACAATCTTTGGGGCTTTGTTCGTCTCTCTCTTGCCTCTGCTGTCATGCTCTGCCTTGAAGTGTGGTATTTTATGGCCCTCATCCTCTTCGCTGGATATTTAAAGAATGCAGAGGTTTCGGTCGATGCCTTGTCCATCTGCATGAACATATTGGGATGGACCATCATGGTATCCTTTGGAATGAACGCAGCCGTAAGTGTGAGGGTGTCAAATGAACTAGGAGCATGTCACCCAAGAACAGCAAAGTTTTCACTTCTTGTTGCTGTGATTACTTCAACTCTGATCGGTGTCATGCTCTCGATGGTGCTGATAATCTTCCGGAACCAGTACCCTTTCTTGTTTTCAAATGATTCAGAAGTGAGAAAGATTGTGGTAGAGCTCACGCCCATGTTGGCCCTTTGCATTGTCATCAACAACGTGCAACCCGTTCTCTCAGGTGTTGCTGTTGGCGCAGGGTGGCAGGCTGTGGTTGCTTACGTGAATATTGCTTGTTACTACTTTTTCGGTATTCCTCTGGGTCTTATTTTAGGGTACAAGCTTGACAAGGGGGTCATGGGGATTTGGTCTGGAATGTTGTTAGGAACTATCTTACAAACTTGTGTTTTATTCTTCATGGTCTATAGAACAGATTGGAATAAAGAGGCATCCCTTGCGGAAGATAGAATAAAGCAGTGGGGTGGGCATGAAGATTCAAAAACGCATGCTATAGCGAAGAATGATCAAGAAACATGA

Predicted protein sequences of Glyma18g20820

Limit To All Plant Sequences

>Glyma18g20820.1   sequence type=predicted peptide   gene model=Glyma18g20820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDHEDHTHPLLTPRHHTPDPAVVFTAKSDDIAPIAGAGDFAREFFAESKKLWYLAGPAIFTSVCQYSLGAVTQVFSGHVSTLALAAISIENSVIAGFCLGITFGMGSALETLCGQAYGAGQVHMLGVYMQRSWVILNATAILLTLLYIFAAPLLRAIGQTEAISAAAGDFAVWMIPQLFAYAVNYPAQKFLQAQSRIMVMAWIAAAALVLHTVFSWLLMLKLRWGLVGAAVVLNASWWFIDLAQLVYIMGGACGEAWSGFTFKAFHNLWGFVRLSLASAVMLCLEVWYFMALILFAGYLKNAEVSVDALSICMNILGWTIMVSFGMNAAVSVRVSNELGACHPRTAKFSLLVAVITSTLIGVMLSMVLIIFRNQYPFLFSNDSEVRKIVVELTPMLALCIVINNVQPVLSGVAVGAGWQAVVAYVNIACYYFFGIPLGLILGYKLDKGVMVSHFLFIFLSFTNN*

>Glyma18g20820.2   sequence type=predicted peptide   gene model=Glyma18g20820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDHEDHTHPLLTPRHHTPDPAVVFTAKSDDIAPIAGAGDFAREFFAESKKLWYLAGPAIFTSVCQYSLGAVTQVFSGHVSTLALAAISIENSVIAGFCLGITFGMGSALETLCGQAYGAGQVHMLGVYMQRSWVILNATAILLTLLYIFAAPLLRAIGQTEAISAAAGDFAVWMIPQLFAYAVNYPAQKFLQAQSRIMVMAWIAAAALVLHTVFSWLLMLKLRWGLVGAAVVLNASWWFIDLAQLVYIMGGACGEAWSGFTFKAFHNLWGFVRLSLASAVMLCLEVWYFMALILFAGYLKNAEVSVDALSICMNILGWTIMVSFGMNAAVSVRVSNELGACHPRTAKFSLLVAVITSTLIGVMLSMVLIIFRNQYPFLFSNDSEVRKIVVELTPMLALCIVINNVQPVLSGVAVGAGWQAVVAYVNIACYYFFGIPLGLILGYKLDKGVMGIWSGMLLGTILQTCVLFFMVYRTDWNKEASLAEDRIKQWGGHEDSKTHAIAKNDQET*

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