SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g20711

Feature Type:gene_model
Chromosome:Gm18
Start:22930480
stop:22933955
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g20711
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60770AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:22366959-22368648 REVERSE LENGTH=491 SoyBaseE_val: 2.00E-80ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF90Panther SUBFAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_B9SPI6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SPI6_RICCO SoyBaseE_val: 3.00E-115ISS
UniRef100_UPI000233EB0BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EB0B related cluster n=1 Tax=unknown RepID=UPI000233EB0B SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g20711
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g20711 not represented in the dataset
Glyma18g20711 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g20711
ParalogEvidenceComments
Glyma08g39090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g20711 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g143000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g20711
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g20711
>Glyma18g20711.1   sequence type=CDS   gene model=Glyma18g20711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGATGCAACGGTACGGGCGCCACAAGAGCGTGGTGAAGCGGTCGAAGAAGTACTTGGAGGAGGCGCAAATGGGAGAAACCATGGCTAAGAGGAACATGATCAAGACTGTCAGGGACCATGCTATACATCTCGACCTGCTTGCAAAGGCTCGAGGAATTACTGCTGCTAAAAATTATTTTGTTAATCTCCCAGAATCTGCTAAGAATCATCTATGTCATGGTGCTATTCTAAACTGTTACTGCAAGGAACCGATGATTGAAAAGGCAGAAGGTTTTATGGAAAAGATGAAGGAGCTTAGCCTTCCTTTAAGTTCCATGCCTTACAATAGTCTTATAATGCTCTATACAAAAGTAGGGCAACCTGAAAAGGTTTCATCACTCATACAAGAAATGAAGACTAGCAATATCATGCTGGATTCATACACATATAATGTTTGGATGAGAGCTCTTGCTGCCGTTAATGATATTTCTAGTGTTGAAAGGGTTCATGATGAGATGAATAACTTATATGAGGTTTTTAGGGTGTGGCGTTCACTTAGGCTAGCATTTCCTAAAACTGCAAACATAAGCTACCTGAACATGATTCGGGTGTTGGAATGTGGCTGCCCCACTTATGATATTCGAGTTGTGAATGTTTTGATAAGGGCATATGCAAAATTAGATATGCTGGAGAAGGCTGAAGAGCTCAAGGAGCATGCTCGGAGGAGGGGTGCCAAGCCTAATGGAAAAACCTTGGAAATCTTTATGGATTACTATTTGCAAAAAGGAAACTTTAAGTCAACAGTGGATTGTCTAGACGAAGCAATATCAATGGGTAGATGGAATGGTGAGAAGAATTTTGAGCAAGAGAAGGATGTTGATGGTGCAGAAGAATTTCTAGAGATCTTGAAGAAGTCTATGGAATCTCCAGGGGTGGAGGTATTTGAATCCTTGACCAGAACTTATGCAGCTACGGGTAGGATCAGTTCAGCTATGCTACGACGATTGAAGATGGAGAATGTGCAGGTGAGTGAAGGCACCCAGAAGTTACTTGAGGCAATTTCTGAGGAGTGA
Predicted protein sequences of Glyma18g20711
>Glyma18g20711.1   sequence type=predicted peptide   gene model=Glyma18g20711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLMQRYGRHKSVVKRSKKYLEEAQMGETMAKRNMIKTVRDHAIHLDLLAKARGITAAKNYFVNLPESAKNHLCHGAILNCYCKEPMIEKAEGFMEKMKELSLPLSSMPYNSLIMLYTKVGQPEKVSSLIQEMKTSNIMLDSYTYNVWMRALAAVNDISSVERVHDEMNNLYEVFRVWRSLRLAFPKTANISYLNMIRVLECGCPTYDIRVVNVLIRAYAKLDMLEKAEELKEHARRRGAKPNGKTLEIFMDYYLQKGNFKSTVDCLDEAISMGRWNGEKNFEQEKDVDGAEEFLEILKKSMESPGVEVFESLTRTYAATGRISSAMLRRLKMENVQVSEGTQKLLEAISEE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo