Glyma18g20700 - SoyBase

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Report for Sequence Feature Glyma18g20700

Feature Type:	gene_model
Chromosome:	Gm18
Start:	22868072
stop:	22872735
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g20700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10750	AT	Annotation by Michelle Graham. TAIR10: Protein of Unknown Function (DUF239) \| chr1:3574986-3578310 REVERSE LENGTH=467	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PF03080	PFAM	Arabidopsis proteins of unknown function	JGI		ISS
UniRef100_G7K053	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Carboxyl-terminal proteinase-like protein n=1 Tax=Medicago truncatula RepID=G7K053_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E9BC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9BC related cluster n=1 Tax=unknown RepID=UPI000233E9BC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g20700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g20700

Paralog	Evidence	Comments
Glyma08g39101	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g20700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g142900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g20700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g20700

Limit To All Plant Sequences

>Glyma18g20700.1   sequence type=CDS   gene model=Glyma18g20700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATGGCTTTGGGATGTGTTTCCATGGACAAAATCAAAACCCAGGAAGACACAAACTCCTTCTGTTGGTAGAACAAGACAACACAAATGTGGACAAACACACACATGGAAACGAAGTTTCCTAAACATAGATTTTAGTCTGTGTTTGCGCTCCCCAATTGTTTCCCTCCTTGTACATTTTCTCTTTGTCGTTTCTACCCTTTTTCCTGTTCATTCTTCACAATTTGGTGACCACCACCCTGTTGCAAATCAAACTTTTCGGCCGAAGGAAGAGCTGCGCAAGTTGAACGCCATCAGAAATCGGCTTCAGCTAATCAACAAGCCTCCTGTTAAGACAATTCAGAGTTCTTATGGTGATATAATAGACTGTGTTGCGTCTCATATGCAACATGCTTTTGATCATCCTCAACTGAAAGGACAAAAACCATTGGATCCTCCAGAGAGACCAAGAGGGCATAACCAAATGGATGATGATTTGAGTGATAGCTTTCAGTTATGGAGTTTATCAGGTGAGTCATGTCCTGAAGGAACGATTCCAATTAGAAGAACAACGGAAGAAGACATGTTGAGAGCAAACTCTGTTCGCAGATTTGGAAGGAAAAAAGTAATAAACCGTGTCAGAAGGGACACCAGCGGCAATGGACATGAGCATGCAATTGGGTATGTGACAGGGGATCAGTACTACGGAGCAAAGGCTAGCATTAACGTGTGGGCACCCCTTGTGGAAAACCCATATGAATTCAGCTTGTCTCAAATGTGGGTCATTTCTGGTTCATTTGGGGATGATCTCAACACCATTGAAGCTGGTTGGCAGGTGAGTCCGGAGCTATACGGGGACAGCTACCCTAGATTCTTTACTTATTGGACGACTGATGCATATCAAGCAACTGGGTGTTACAATTTACTCTGCTCAGGCTTTGTTCAAACAAACAGTAAAATTGCAATTGGAGCAGCAATCTCTCCAACTTCTTCATATAGTGGTGGACAATTTGATATTAGCTTACTCATTTGGAAGGATCCAAAGCATGGGAATTGGTGGCTTGAATTTGGATCAGGGATCCTAGTTGGGTACTGGCCATCCTTCTTGTTCACCCACTTAGGGGATCATGCAAGCATGATTCAATTTGGTGGAGAAATAGTGAATTCAGGTTCATCAGGGTCTCACACTTCCACCCAAATGGGTAGTGGACATTTTGCTGAAGAGGGTTTTGCAAAAGCTTCATATTTTAGGAACATGCAAGTTGTGGATTGGGACAACAACTTGATTCCCTTGTCAAATTTAAAGGTCCTAGCAGATCACCCGAATTGCTATGACATACAAGGAGGGGTTAATAACGCGTGGGGGAATTATTTTTACTACGGTGGACCTGGCAGAAATGTAAAGTGTCCCTAA

Predicted protein sequences of Glyma18g20700

Limit To All Plant Sequences

>Glyma18g20700.1   sequence type=predicted peptide   gene model=Glyma18g20700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTWLWDVFPWTKSKPRKTQTPSVGRTRQHKCGQTHTWKRSFLNIDFSLCLRSPIVSLLVHFLFVVSTLFPVHSSQFGDHHPVANQTFRPKEELRKLNAIRNRLQLINKPPVKTIQSSYGDIIDCVASHMQHAFDHPQLKGQKPLDPPERPRGHNQMDDDLSDSFQLWSLSGESCPEGTIPIRRTTEEDMLRANSVRRFGRKKVINRVRRDTSGNGHEHAIGYVTGDQYYGAKASINVWAPLVENPYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDSYPRFFTYWTTDAYQATGCYNLLCSGFVQTNSKIAIGAAISPTSSYSGGQFDISLLIWKDPKHGNWWLEFGSGILVGYWPSFLFTHLGDHASMIQFGGEIVNSGSSGSHTSTQMGSGHFAEEGFAKASYFRNMQVVDWDNNLIPLSNLKVLADHPNCYDIQGGVNNAWGNYFYYGGPGRNVKCP*

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