SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G10760 | AT | Annotation by Michelle Graham. TAIR10: Pyruvate phosphate dikinase, PEP/pyruvate binding domain | chr1:3581210-3590043 REVERSE LENGTH=1399 | SoyBase | E_val: 0 | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0005983 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch catabolic process | SoyBase | N/A | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0009610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus | SoyBase | N/A | ISS |
| GO:0009631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cold acclimation | SoyBase | N/A | ISS |
| GO:0010353 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to trehalose stimulus | SoyBase | N/A | ISS |
| GO:0016310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphorylation | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0050521 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-glucan, water dikinase activity | SoyBase | N/A | ISS |
| PTHR22931 | Panther | PHOSPHOENOLPYRUVATE DIKINASE-RELATED | JGI | ISS | |
| PTHR22931:SF1 | Panther | ALPHA-GLUCAN WATER DIKINASE, CHLOROPLAST PRECURSOR | JGI | ISS | |
| PF01326 | PFAM | Pyruvate phosphate dikinase, PEP/pyruvate binding domain | JGI | ISS | |
| UniRef100_B9SPI3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-glucan water dikinase, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SPI3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E9BB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E9BB related cluster n=1 Tax=unknown RepID=UPI000233E9BB | SoyBase | E_val: 0 | ISS |
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Glyma18g20600 not represented in the dataset |
Glyma18g20600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g39110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g142500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g20600.2 sequence type=CDS gene model=Glyma18g20600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCCAGAGTATCTTCCACCAGACGGTGCTTTGTCAAACGCAAACGGTTGCGGAGCATCAAAGTAAGGTTAGTTCCTTGGAGGTGAGTGCGAACAAAGGAAAGAAGAACCTGTTTTTGACTCCTACAAATTTTCGCGGGAGCAGGCTGTGTGTGAGGAAACGCAAATTAACCATGGGAAGGCACCACCACCGCCACGTTGACGCTGTTCCACGCGCTGTTTTAACCACCAATCTGGCTTCTGAGCTTTCTGGGAAGTTCAACCTTGACGGAAATATTGAGTTGCAGATTGCTGTTAGTTCTTCAGAACCAGGAGCTGCAAGACAAGTAGATTTTAAGGTTTCATATAATAGTGAGTCTCTGCTTTTACATTGGGGAGTTGTGCGTGATCAGCCAGGGAAGTGGGTTCTTCCTTCTCGTCACCCAGATGGAACTAAAAATTATAAGAGCAGAGCTCTTAGAACTCCTTTTGTGAAATCCGACTCAGGATCTTTCCTTAAAATAGAAATTGACGATCCTGCTGCACAAGCCATTGAGTTCCTCATACTTGATGAGGCTAAGAATAAGTGGTTTAAGAATAATGGTGAGAACTTTCACATCAAGTTACCAGTAAAAAGCAAGCTATCTCAAGAAGTTTCAGTTCCTGAAGACCTTGTACAGATTCAAGCATATCTTAGGTGGGAACGAAAGGGTAAGCAGATGTACACTCCAGAGCAAGAGAAGGAGGAATATGAAGCAGCTCGGAATGAACTATTGGAGGAAGTAGCCAGGGGTACTTCTGTGCAAGATCTCCATGCAAGGTTAACTAAGAAAACTAAAGCTGCCGAAGTAAAGGAGCCTTCTGTTTCTGAAACAAAGACCATCCCTGATGAACTTGTACAGATTCAAGCTTTTATACGATGGGAAAAAGCTGGGAAGCCTAACTACTCTCGGGAACAACAACTTATGGAATTTGAGGAAGCAAGAAAAGAATTGTTAGAAGAGCTTGAGAAGGGGGCTTCTCTGGATGCGATACGGAAGAAGATTGTCAAAGGAGAGATACAAACTAAAGTTGCCAAGCAATTGAAAACCAAAAAATACTTTCGTGCTGAAAGAATACAGAGGAAAAAGAGAGATTTGATGCAGCTTATCAACCGAAATGTTGCACAAAATATAGTTGAACAAGTTATAGATGCTCCAAAAGCCTTGACAGTAATTGAACATTATGCCAATGCAAGGGAAGAATATGAAAGTGGTCCTGTTTTGAATAAGACAATATACAAGCTTGGTGATAATTATCTTCTGGTCCTTGTTACCAAGGATGCTGGCAAGATTAAGGTTCACCTAGCTACAGACTCGAAAAAACCTTTTACACTTCACTGGGCCTTATCTAGAACATCTGAAGAGTGGTTGGTACCACCTGAAACTGCTCTGCCCCCTGGATCTGTTACTATGAATGAGGCCGCTGAAACACCTTTCAAAGCTGGTTCTTCGTCTCATCCTTCTTATGAGGTCCAGTCCTTGGATATAGAGGTTGATGATGATACTTTTAAAGGAATACCTTTTGTCATTCTGTCGGATGGAGAATGGATAAAGAACAATGGATCAAATTTTTATATTGAATTTGGAGGGAAGAAGCAGAAACAGAAGGATTTTGGCAATGGCAAAGGTACAGCCAAGTTCTTGTTGAATAAAATAGCAGAAATGGAAAGTGAGGCACAAAAGTCCTTCATGCATCGATTTAACATTGCATCAGATTTGATAGATGAAGCCAAAAATGCTGGTCAACTGGGTCTTGCGGGGATTTTGGTGTGGATGAGATTCATGGCTACAAGGCAGCTCATATGGAACAAAAATTACAATGTGAAGCCACGTGAGATAAGTAAAGCACAGGATAGGCTTACAGACTTGCTCCAAGATGTTTATGCAAATTATCCACAGTATAGGGAAATTGTGAGGATGATCTTGTCCACTGTTGGTCGTGGAGGTGAAGGAGATGTCGGACAGAGGATTCGGGATGAAATCCTTGTTATCCAGAGAAATAATGATTGCAAAGGTGGAATGATGGAGGAATGGCACCAGAAATTACACAATAATACTAGTCCTGATGATGTTGTAATCTGTCAGGCACTAATTGATTATATAAATAGTGACTTTGATATTGGTGTTTACTGGAAAGCATTGAATGACAATGGAATAACAAAAGAGCGGCTTCTGAGCTATGACCGTGCCATCCATTCTGAACCAAATTTTAGGAGAGATCAGAAGGAAGGTCTTCTGCGAGATCTGGGAAACTACATGAGGACTTTAAAGGCAGTTCATTCCGGTGCAGATCTTGAATCTGCTATTTCAAATTGTATGGGCTACAAATCTGAGGGTCAGGGCTTCATGGTAGGGGTGAAGATAAATCCAGTGCCGGGTTTGCCTACTGGTTTTCCAGAATTACTTGAGTTTGTCATGGAACACGTTGAAGAGAAGAATGTTGAACCACTTCTTGAGGGGTTGCTTGAGGCTCGTCAGGAACTCCAACCATCACTCAGTAAATCCCAAAGTCGTCTGAAAGATCTTATATTTTTGGATGTTGCCCTTGATTCTACAGTTAGAACAGCAGTGGAAAGGAGTTATGAGGAATTAAACAATGCTGGACCTGAGAAAATAATGTACTTCATTAGCTTGGTTCTTGAAAATCTCGCACTTTCATCGGATGACAATGAAGATCTTATCTACTGTTTGAAGGGATGGGATGTTGCCTTAAGCATGTGCAAGATTAAAGATACTCATTGGGCATTGTACGCAAAATCAGTCCTTGACAGAACCCGTCTTGCACTAACAAACAAGGCTCATTTATACCAGGAAATTCTGCAACCATCGGCAGAATATCTTGGATCACTGCTTGGCGTGGACAAATGGGCCGTGGAAATATTTACTGAAGAAATTATCCGTGCTGGATCTGCTGCTTCTTTGTCTACTCTTCTAAATCGACTGGATCCTGTGCTCCGAAAGACAGCTCATCTTGGAAGCTGGCAGGTTATTAGTCCAGTTGAAACTGTTGGATATGTTGAGGTTGTAGATGAGTTGCTTACTGTTCAAAACAAATCATATGAGCGACCTACAATTTTGATAGCCAATAGTGTGAAAGGAGAGGAAGAAATTCCAGATGGTACAGTTGCTGTCCTGACACCTGATATGCCTGATGTCCTATCCCATGTTTCTGTACGAGCAAGAAATAGCAAGGTGTGTTTTGCTACATGCTTTGATCCCAATATCCTGGCTAACCTCCAAGAATATAAAGGAAAGCTTTTACGCTTAAAGCCTACATCTGCTGATGTAGTTTATAGTGAGGTCAAGGAGGGTGAGTTTATTGATGACAAATCAACTCAACTGAAAGATGTTGGTTCTGTGTCACCCATATCTCTGGCCAGAAAGAAGTTTAGTGGTAGATATGCTGTCTCATCTGAAGAATTCACTGGTGAAATGGTTGGAGCTAAATCTCGTAATATCTCTTATTTAAAAGGGAAAGTAGCTTCTTGGATTGGAATTCCTACCTCAGTTGCCATACCATTTGGAGTTTTTGAACATGTTCTTTCTGATAAACCAAACCAGGCAGTGGCTGAGAGGGTCAATAATTTGAAAAAGAAGTTAACTGAGGGAGACTTCAGTGTTCTCAAGGAGATTCGTGAAACAGTTCTACAGTTGAATGCACCATCCCAGTTGGTAGAGGAGTTGAAAACTAAAATGAAGAGTTCTGGAATGCCGTGGCCGGGTGATGAAGGTGAACAACGATGGGAACAAGCTTGGATAGCTATAAAAAAGGTGTGGGGCTCAAAGTGGAATGAAAGAGCATACTTCAGCACAAGAAAAGTGAAACTCGACCACGAATATCTTTCCATGGCAGTCCTGGTTCAGGAAGTGATAAATGCTGACTATGCTTTTGTCATCCACACAACTAACCCTGCCTCTGGAGATTCATCGGAAATATATGCTGAGGTGGTAAAGGGACTTGGAGAAACACTGGTTGGAGCTTATCCTGGTCGTGCTTTGAGTTTTATCTGCAAGAAACGTGATTTGAACTCTCCTCAGGTCTTGGGTTATCCTAGCAAACCTGTCGGCCTATTTATAAGACAGTCAATTATTTTCCGATCTGATTCCAATGGTGAAGATCTAGAAGGTTATGCTGGTGCAGGTCTTTATGACAGTGTGCCAATGGATGAAGCCGAGAAGGTGGTGCTTGATTATTCATCAGACAAACTGATCCTTGATGGTAGTTTTCGCCAGTCAATCTTGTCCAGCATTGCCCGTGCAGGAAATGAAATTGAAGAGTTGTATGGCACTCCTCAGGACATTGAAGGTGTCATCAAGGATGGCAAAGTCTATGTTGTCCAGACCAGACCACAAATGTAA
>Glyma18g20600.2 sequence type=predicted peptide gene model=Glyma18g20600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSQSIFHQTVLCQTQTVAEHQSKVSSLEVSANKGKKNLFLTPTNFRGSRLCVRKRKLTMGRHHHRHVDAVPRAVLTTNLASELSGKFNLDGNIELQIAVSSSEPGAARQVDFKVSYNSESLLLHWGVVRDQPGKWVLPSRHPDGTKNYKSRALRTPFVKSDSGSFLKIEIDDPAAQAIEFLILDEAKNKWFKNNGENFHIKLPVKSKLSQEVSVPEDLVQIQAYLRWERKGKQMYTPEQEKEEYEAARNELLEEVARGTSVQDLHARLTKKTKAAEVKEPSVSETKTIPDELVQIQAFIRWEKAGKPNYSREQQLMEFEEARKELLEELEKGASLDAIRKKIVKGEIQTKVAKQLKTKKYFRAERIQRKKRDLMQLINRNVAQNIVEQVIDAPKALTVIEHYANAREEYESGPVLNKTIYKLGDNYLLVLVTKDAGKIKVHLATDSKKPFTLHWALSRTSEEWLVPPETALPPGSVTMNEAAETPFKAGSSSHPSYEVQSLDIEVDDDTFKGIPFVILSDGEWIKNNGSNFYIEFGGKKQKQKDFGNGKGTAKFLLNKIAEMESEAQKSFMHRFNIASDLIDEAKNAGQLGLAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQDVYANYPQYREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNDCKGGMMEEWHQKLHNNTSPDDVVICQALIDYINSDFDIGVYWKALNDNGITKERLLSYDRAIHSEPNFRRDQKEGLLRDLGNYMRTLKAVHSGADLESAISNCMGYKSEGQGFMVGVKINPVPGLPTGFPELLEFVMEHVEEKNVEPLLEGLLEARQELQPSLSKSQSRLKDLIFLDVALDSTVRTAVERSYEELNNAGPEKIMYFISLVLENLALSSDDNEDLIYCLKGWDVALSMCKIKDTHWALYAKSVLDRTRLALTNKAHLYQEILQPSAEYLGSLLGVDKWAVEIFTEEIIRAGSAASLSTLLNRLDPVLRKTAHLGSWQVISPVETVGYVEVVDELLTVQNKSYERPTILIANSVKGEEEIPDGTVAVLTPDMPDVLSHVSVRARNSKVCFATCFDPNILANLQEYKGKLLRLKPTSADVVYSEVKEGEFIDDKSTQLKDVGSVSPISLARKKFSGRYAVSSEEFTGEMVGAKSRNISYLKGKVASWIGIPTSVAIPFGVFEHVLSDKPNQAVAERVNNLKKKLTEGDFSVLKEIRETVLQLNAPSQLVEELKTKMKSSGMPWPGDEGEQRWEQAWIAIKKVWGSKWNERAYFSTRKVKLDHEYLSMAVLVQEVINADYAFVIHTTNPASGDSSEIYAEVVKGLGETLVGAYPGRALSFICKKRDLNSPQVLGYPSKPVGLFIRQSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDKLILDGSFRQSILSSIARAGNEIEELYGTPQDIEGVIKDGKVYVVQTRPQM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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