Glyma18g20500 - SoyBase

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Report for Sequence Feature Glyma18g20500

Feature Type:	gene_model
Chromosome:	Gm18
Start:	22272535
stop:	22276851
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g20500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70530	AT	Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 3 \| chr1:26588750-26591379 REVERSE LENGTH=646	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF433	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF01657	PFAM	Domain of unknown function DUF26	JGI		ISS
UniRef100_B9SPH8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SPH8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E9B9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9B9 related cluster n=1 Tax=unknown RepID=UPI000233E9B9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g20500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g20500

Paralog	Evidence	Comments
Glyma08g39150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g20500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g141700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g20500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g20500

Limit To All Plant Sequences

>Glyma18g20500.2   sequence type=transcript   gene model=Glyma18g20500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTATAATACTACCATCTACATTCCTTCATTTCTCCCCCACCCTGTTCTCTCTGACTCCACACCTACTATTTTCTCGTACTTCAAGTTCAAACACGAAAGTTTCCAAGCTTATCCATCAAAACAAAAAAAATCCAACTTCGATGCCTTCTTCTTCCTTTCTGTTTCTCTTCCACTGTTCATTCTTCTTACCTTATGCCCTCTCCGACCCAAGAGCCCAGAGAGCCGCGCTGCTATGCACGAACCGCACCGTTTTATCCCTCTCCCGGCGCCAAGTCTTCATCGCGAACTTCCTGGCGGCGATGGACGCGCTGACGCCTCTCACCACCTCGCACGGCCACGGCGCCGTCTCCAACGGCTCCCAAAACGCCACCGTTTACGCCTTCGGCGAGTGCATGAGGGACCTCTCGCGGAACGACTGCAACTTGTGCCTGGCTCAGTGCAAGACGCAGCTCCTCGCCTGCCTCCCTTTCCAGAGAGGGACACGTGGCGGCCGCCTGTTCTTCGACGGCTGCTACCTCAGGTACGATGACTACAACTTCTTCGGCGAAACTCGAAGCGACCAAGATACCACCGTGTGTGGAAATAATAGTAATAACAACAATTCTAACAGTGTTGCTAATAGTGCTACTAATAGCAGTAGCGGTGTTTATAAGGCTAATGCTATGGCCTTGGTTCTGAACCTGAGCGAGTTGGCGCCGAAAAGCGATGGGTTTTTCGTGGGGTCTGTCGAGAGAAAGAACGTGCGTGTTTACGGGTTGGCTCAGTGCTGGGAGTATGTGAATGGCAGTGCTTGTGAGAGATGTTTGGCGGATGCTGTCACGAGGATTGGCTCGTGTGCCACGCAAGAAGCCAGGGCGTTGAATGCTGGTTGTTACTTGAGGTACTCTGCGCAGAAGTTTTATAACAATTCGGGCGTTGTGCCAACCGCTGGAAAACATGGAAAACGGAGACTAGCTAAAATTCTGGCTGCGTCTTCTGCTGCCTTGGCTCTTCTGCTGGTAATTGCAACAGTTGTTTTCTTTATAAGGAAGAATGTGGTGACAAGGAGAAGAGAAAGAAGACAGTTTGGTGCTCTTCTGGACACAGTGAATAAGTCCAAGCTAAATATGCCTTACGAGGTTCTTGAAAAAGCAACAAATTACTTCAATGAGGCCAACAAGCTTGGACAAGGGGGATCAGGTTCTGTTTATAAAGGAGTTATGCCAGATGGAATTACCGTTGCAATAAAAAGGCTTAGCTTCAACACAACGCAATGGGCGGATCATTTCTTCAATGAGAGCCTCCATGATCACTTTTCTGTAAGAAGGACTTCTCAACCGCTGACTTGGGAAATCAGGCACAAAATTTTATTAGGAATTGCAGAGGGCATGGCCTACCTTCATGAGGAATCACATGTGAGAATCATTCATAGAGACATAAAATTGAGCAACATTCTGCTTGAAGAGGACTTTACACCCAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCTGAAGACAAGTCTCACATTAGCACAGCCATTGCTGGCACACTGGGGTATATGGCTCCAGAGTATGTTGTTCGTGGGAAGTTGACTGAGAAAGCAGATGTTTACAGTTTTGGAGTTCTTGTTATTGAAATTGTATCTGGCAAAAAAATCAGTGCTTATATTATGAATTCGTCCTCTCTCCTACATACGGTTTGGAGCCTCTATGGATCAAATAGGCTATCTGAAGTTGTTGATCCGACCCTAGAGGGTGCTTTTCCCGCAGAGGTAGCATGCCAACTGCTTCAGATAGGGTTACTTTGTGCACAAGCATCTGCAGAGTTGAGACCATCAATGTCAGTAGTAGTTAAAATGGTTAATAACGATCACGAAATTCCTCAGCCAACACAACCGCCGTTCATGAATTCCGGTAGTTCAGAATTTGGCAAATCTGGTTTACCTGGATATAATTTTCAGCCTGGATCCAACACTCAGTCTTCAGGGAACACCATAAGTGAAAGTGAGATTGAGCCTAGATAAGTTACATTACACATCCTTTCTCCTGGACCATGTTTTGTGCTCACAATCCCCAAGTACCCTTATAAAAGCTGTTGGCATGTTTGCTTTCTTGAAAAAGTATGGTTTCAATTATCAACAAGGCATTCCCTTGTACATCTCTGAATTGAAAGGGGAGTGACACAACCCCACATATGAACCATCTGCCAACAGTTAGGACTGGTTGCTATTTGTATAGATCACAGTTTCACAAAAGGCTGCAAGGTATAAAAGTTAAATTTTTCCGAAAACTTGTACATTCCATTATAACACAGGTCACCCAGAAAAGAATCAATAAGCTGATCTATGCAAAATTTATACCATGTTTTTTTAACTGTTTGAGTTCTCTACTAATACCTGATTGAGTTTTCTACCAGACACCTAGAATGAAAGGTACAGGGATTCCAAAAATTTTACTTGTAACCACCAGTGATTATTTATTTACCTTTTATTCTTTTATTTAACATAATTTATTTTAAGTTCCTTATTTTATTGTTAACTATTTTTTAGTCTACAG

Coding sequences of Glyma18g20500

Limit To All Plant Sequences

>Glyma18g20500.1   sequence type=CDS   gene model=Glyma18g20500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCTTCTTCCTTTCTGTTTCTCTTCCACTGTTCATTCTTCTTACCTTATGCCCTCTCCGACCCAAGAGCCCAGAGAGCCGCGCTGCTATGCACGAACCGCACCGTTTTATCCCTCTCCCGGCGCCAAGTCTTCATCGCGAACTTCCTGGCGGCGATGGACGCGCTGACGCCTCTCACCACCTCGCACGGCCACGGCGCCGTCTCCAACGGCTCCCAAAACGCCACCGTTTACGCCTTCGGCGAGTGCATGAGGGACCTCTCGCGGAACGACTGCAACTTGTGCCTGGCTCAGTGCAAGACGCAGCTCCTCGCCTGCCTCCCTTTCCAGAGAGGGACACGTGGCGGCCGCCTGTTCTTCGACGGCTGCTACCTCAGGTACGATGACTACAACTTCTTCGGCGAAACTCGAAGCGACCAAGATACCACCGTGTGTGGAAATAATAGTAATAACAACAATTCTAACAGTGTTGCTAATAGTGCTACTAATAGCAGTAGCGGTGTTTATAAGGCTAATGCTATGGCCTTGGTTCTGAACCTGAGCGAGTTGGCGCCGAAAAGCGATGGGTTTTTCGTGGGGTCTGTCGAGAGAAAGAACGTGCGTGTTTACGGGTTGGCTCAGTGCTGGGAGTATGTGAATGGCAGTGCTTGTGAGAGATGTTTGGCGGATGCTGTCACGAGGATTGGCTCGTGTGCCACGCAAGAAGCCAGGGCGTTGAATGCTGGTTGTTACTTGAGGTACTCTGCGCAGAAGTTTTATAACAATTCGGGCGTTGTGCCAACCGCTGGAAAACATGGAAAACGGAGACTAGCTAAAATTCTGGCTGCGTCTTCTGCTGCCTTGGCTCTTCTGCTGGTAATTGCAACAGTTGTTTTCTTTATAAGGAAGAATGTGGTGACAAGGAGAAGAGAAAGAAGACAGTTTGGTGCTCTTCTGGACACAGTGAATAAGTCCAAGCTAAATATGCCTTACGAGGTTCTTGAAAAAGCAACAAATTACTTCAATGAGGCCAACAAGCTTGGACAAGGGGGATCAGGTTCTGTTTATAAAGGAGTTATGCCAGATGGAATTACCGTTGCAATAAAAAGGCTTAGCTTCAACACAACGCAATGGGCGGATCATTTCTTCAATGAGGTCAATTTGATTAGTGGCATTCATCACAAAAATCTAGTAAAACTTTTAGGGTGCAGCATCACAGGACCTGAAAGCCTTCTTGTTTATGAATATGTGCCTAACCAGAGCCTCCATGATCACTTTTCTGTAAGAAGGACTTCTCAACCGCTGACTTGGGAAATCAGGCACAAAATTTTATTAGGAATTGCAGAGGGCATGGCCTACCTTCATGAGGAATCACATGTGAGAATCATTCATAGAGACATAAAATTGAGCAACATTCTGCTTGAAGAGGACTTTACACCCAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCTGAAGACAAGTCTCACATTAGCACAGCCATTGCTGGCACACTGGGGTATATGGCTCCAGAGTATGTTGTTCGTGGGAAGTTGACTGAGAAAGCAGATGTTTACAGTTTTGGAGTTCTTGTTATTGAAATTGTATCTGGCAAAAAAATCAGTGCTTATATTATGAATTCGTCCTCTCTCCTACATACGGTTTGGAGCCTCTATGGATCAAATAGGCTATCTGAAGTTGTTGATCCGACCCTAGAGGGTGCTTTTCCCGCAGAGGTAGCATGCCAACTGCTTCAGATAGGGTTACTTTGTGCACAAGCATCTGCAGAGTTGAGACCATCAATGTCAGTAGTAGTTAAAATGGTTAATAACGATCACGAAATTCCTCAGCCAACACAACCGCCGTTCATGAATTCCGGTAGTTCAGAATTTGGCAAATCTGGTTTACCTGGATATAATTTTCAGCCTGGATCCAACACTCAGTCTTCAGGGAACACCATAAGTGAAAGTGAGATTGAGCCTAGATAA

>Glyma18g20500.2   sequence type=CDS   gene model=Glyma18g20500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCTTCTTCCTTTCTGTTTCTCTTCCACTGTTCATTCTTCTTACCTTATGCCCTCTCCGACCCAAGAGCCCAGAGAGCCGCGCTGCTATGCACGAACCGCACCGTTTTATCCCTCTCCCGGCGCCAAGTCTTCATCGCGAACTTCCTGGCGGCGATGGACGCGCTGACGCCTCTCACCACCTCGCACGGCCACGGCGCCGTCTCCAACGGCTCCCAAAACGCCACCGTTTACGCCTTCGGCGAGTGCATGAGGGACCTCTCGCGGAACGACTGCAACTTGTGCCTGGCTCAGTGCAAGACGCAGCTCCTCGCCTGCCTCCCTTTCCAGAGAGGGACACGTGGCGGCCGCCTGTTCTTCGACGGCTGCTACCTCAGGTACGATGACTACAACTTCTTCGGCGAAACTCGAAGCGACCAAGATACCACCGTGTGTGGAAATAATAGTAATAACAACAATTCTAACAGTGTTGCTAATAGTGCTACTAATAGCAGTAGCGGTGTTTATAAGGCTAATGCTATGGCCTTGGTTCTGAACCTGAGCGAGTTGGCGCCGAAAAGCGATGGGTTTTTCGTGGGGTCTGTCGAGAGAAAGAACGTGCGTGTTTACGGGTTGGCTCAGTGCTGGGAGTATGTGAATGGCAGTGCTTGTGAGAGATGTTTGGCGGATGCTGTCACGAGGATTGGCTCGTGTGCCACGCAAGAAGCCAGGGCGTTGAATGCTGGTTGTTACTTGAGGTACTCTGCGCAGAAGTTTTATAACAATTCGGGCGTTGTGCCAACCGCTGGAAAACATGGAAAACGGAGACTAGCTAAAATTCTGGCTGCGTCTTCTGCTGCCTTGGCTCTTCTGCTGGTAATTGCAACAGTTGTTTTCTTTATAAGGAAGAATGTGGTGACAAGGAGAAGAGAAAGAAGACAGTTTGGTGCTCTTCTGGACACAGTGAATAAGTCCAAGCTAAATATGCCTTACGAGGTTCTTGAAAAAGCAACAAATTACTTCAATGAGGCCAACAAGCTTGGACAAGGGGGATCAGGTTCTGTTTATAAAGGAGTTATGCCAGATGGAATTACCGTTGCAATAAAAAGGCTTAGCTTCAACACAACGCAATGGGCGGATCATTTCTTCAATGAGAGCCTCCATGATCACTTTTCTGTAAGAAGGACTTCTCAACCGCTGACTTGGGAAATCAGGCACAAAATTTTATTAGGAATTGCAGAGGGCATGGCCTACCTTCATGAGGAATCACATGTGAGAATCATTCATAGAGACATAAAATTGAGCAACATTCTGCTTGAAGAGGACTTTACACCCAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCTGAAGACAAGTCTCACATTAGCACAGCCATTGCTGGCACACTGGGGTATATGGCTCCAGAGTATGTTGTTCGTGGGAAGTTGACTGAGAAAGCAGATGTTTACAGTTTTGGAGTTCTTGTTATTGAAATTGTATCTGGCAAAAAAATCAGTGCTTATATTATGAATTCGTCCTCTCTCCTACATACGGTTTGGAGCCTCTATGGATCAAATAGGCTATCTGAAGTTGTTGATCCGACCCTAGAGGGTGCTTTTCCCGCAGAGGTAGCATGCCAACTGCTTCAGATAGGGTTACTTTGTGCACAAGCATCTGCAGAGTTGAGACCATCAATGTCAGTAGTAGTTAAAATGGTTAATAACGATCACGAAATTCCTCAGCCAACACAACCGCCGTTCATGAATTCCGGTAGTTCAGAATTTGGCAAATCTGGTTTACCTGGATATAATTTTCAGCCTGGATCCAACACTCAGTCTTCAGGGAACACCATAAGTGAAAGTGAGATTGAGCCTAGATAA

Predicted protein sequences of Glyma18g20500

Limit To All Plant Sequences

>Glyma18g20500.1   sequence type=predicted peptide   gene model=Glyma18g20500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSSSFLFLFHCSFFLPYALSDPRAQRAALLCTNRTVLSLSRRQVFIANFLAAMDALTPLTTSHGHGAVSNGSQNATVYAFGECMRDLSRNDCNLCLAQCKTQLLACLPFQRGTRGGRLFFDGCYLRYDDYNFFGETRSDQDTTVCGNNSNNNNSNSVANSATNSSSGVYKANAMALVLNLSELAPKSDGFFVGSVERKNVRVYGLAQCWEYVNGSACERCLADAVTRIGSCATQEARALNAGCYLRYSAQKFYNNSGVVPTAGKHGKRRLAKILAASSAALALLLVIATVVFFIRKNVVTRRRERRQFGALLDTVNKSKLNMPYEVLEKATNYFNEANKLGQGGSGSVYKGVMPDGITVAIKRLSFNTTQWADHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEYVPNQSLHDHFSVRRTSQPLTWEIRHKILLGIAEGMAYLHEESHVRIIHRDIKLSNILLEEDFTPKIADFGLARLFPEDKSHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLVIEIVSGKKISAYIMNSSSLLHTVWSLYGSNRLSEVVDPTLEGAFPAEVACQLLQIGLLCAQASAELRPSMSVVVKMVNNDHEIPQPTQPPFMNSGSSEFGKSGLPGYNFQPGSNTQSSGNTISESEIEPR*

>Glyma18g20500.2   sequence type=predicted peptide   gene model=Glyma18g20500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSSSFLFLFHCSFFLPYALSDPRAQRAALLCTNRTVLSLSRRQVFIANFLAAMDALTPLTTSHGHGAVSNGSQNATVYAFGECMRDLSRNDCNLCLAQCKTQLLACLPFQRGTRGGRLFFDGCYLRYDDYNFFGETRSDQDTTVCGNNSNNNNSNSVANSATNSSSGVYKANAMALVLNLSELAPKSDGFFVGSVERKNVRVYGLAQCWEYVNGSACERCLADAVTRIGSCATQEARALNAGCYLRYSAQKFYNNSGVVPTAGKHGKRRLAKILAASSAALALLLVIATVVFFIRKNVVTRRRERRQFGALLDTVNKSKLNMPYEVLEKATNYFNEANKLGQGGSGSVYKGVMPDGITVAIKRLSFNTTQWADHFFNESLHDHFSVRRTSQPLTWEIRHKILLGIAEGMAYLHEESHVRIIHRDIKLSNILLEEDFTPKIADFGLARLFPEDKSHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLVIEIVSGKKISAYIMNSSSLLHTVWSLYGSNRLSEVVDPTLEGAFPAEVACQLLQIGLLCAQASAELRPSMSVVVKMVNNDHEIPQPTQPPFMNSGSSEFGKSGLPGYNFQPGSNTQSSGNTISESEIEPR*

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