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Report for Sequence Feature Glyma18g19885

Feature Type:gene_model
Chromosome:Gm18
Start:21766256
stop:21768050
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g19885
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33350AT Annotation by Michelle Graham. TAIR10: Tic22-like family protein | chr4:16064638-16066715 REVERSE LENGTH=268 SoyBaseE_val: 2.00E-62ISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009706GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
PF04278PFAM Tic22-like family JGI ISS
UniRef100_G7J6C8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Tic22 n=1 Tax=Medicago truncatula RepID=G7J6C8_MEDTR SoyBaseE_val: 9.00E-72ISS
UniRef100_I1K7Z3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7Z3_SOYBN SoyBaseE_val: 3.00E-86ISS

Expression Patterns of Glyma18g19885
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g19885 not represented in the dataset
Glyma18g19885 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g19885 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g140900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g19885
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g19885
>Glyma18g19885.1   sequence type=CDS   gene model=Glyma18g19885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCGCGTGGACACTCAAACCTGCTTCTGTCATTTTCCAGCTTCATCCATCAACACTGCCATGTGGCTAAGTCCCTCGTCGGCACCTCCATTTTCACCGTCAACAATTCCAACAACGAGTTCGTTCTTATCTCCGACCCCGACGGTGCCAAGTCCATTGGATTGCTTTGCTTTCGCCAAGAGGACGCCGAAGCCTTTCTCGCTCAAGTTCGATCACGTAGTAGAGAGCTTCGAAGCAAGGCTAAAGTTGTTCCAATTACTCTCGACCAGGTTGAAGGCATTGCCTTCCGATTCTTACTTGATCCTGTTCAAATAAGGAATGCTTTGGAGTCAGAGCTTTTGGCTGTGAAGAAGAGGAATAAGCATTACTGCCCTGTGTATTTCTCTAAGGAGGATATTGAGCAGGAACTGTCCAAAGTTTCCAGGGCATCAAGAGCACCTGGTGTTTCTCAGCATATAACGGTATAG
Predicted protein sequences of Glyma18g19885
>Glyma18g19885.1   sequence type=predicted peptide   gene model=Glyma18g19885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESRGHSNLLLSFSSFIHQHCHVAKSLVGTSIFTVNNSNNEFVLISDPDGAKSIGLLCFRQEDAEAFLAQVRSRSRELRSKAKVVPITLDQVEGIAFRFLLDPVQIRNALESELLAVKKRNKHYCPVYFSKEDIEQELSKVSRASRAPGVSQHITV*






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