Glyma18g19720 - SoyBase

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Report for Sequence Feature Glyma18g19720

Feature Type:	gene_model
Chromosome:	Gm18
Start:	21475773
stop:	21478836
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g19720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23420	AT	Annotation by Michelle Graham. TAIR10: Plant-specific transcription factor YABBY family protein \| chr1:8317423-8319104 FORWARD LENGTH=231	SoyBase	E_val: 2.00E-71	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF04690	PFAM	YABBY protein	JGI		ISS
UniRef100_G7K086	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Axial regulator YABBY n=1 Tax=Medicago truncatula RepID=G7K086_MEDTR	SoyBase	E_val: 8.00E-113	ISS
UniRef100_UPI000233EB01	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EB01 related cluster n=1 Tax=unknown RepID=UPI000233EB01	SoyBase	E_val: 2.00E-160	ISS

Expression Patterns of Glyma18g19720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g19720

Paralog	Evidence	Comments
Glyma08g39290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g19720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g140400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g19720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g19720

Limit To All Plant Sequences

>Glyma18g19720.2   sequence type=CDS   gene model=Glyma18g19720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACACTGAACCACCTCTTTGATCTTCCAGAACAGATATGCTACGTACAATGTGGATTCTGTACAACAATACTAATGGTGAGCGTTCCATGCAGCATTTTGTCAACAGTGGTGACCGTGAGATGCGGCCACTGCACAAGCCTCCTCTCTGTCAACATGAAGAAAGCTTCCTTGGTCCCTTTCCACCTTCTAGCTTCCCTTACTCATCTTGAGCCAAAAGAAGGTGCTTCAGAAGATGGTGCAAACAAGAGTTTGAGCAGCTATAATACATCCACAATGACCAATTCGGATTGTGAAGAAGAGAACGTGACCCAAATTTCCGATTTCGTGCATAAACCTCCAGAGAAGAGACAAAGAACACCATCTGCTTATAACCGTTTCATCAAAGAAGAGATTAAAAGGCTTAAGGCTGAAAACCCTAACATGGCCCACAAGGAGGCTTTCAGCACTGCGGCAAAAAATTGGGCCAATTTCCCTCCGTCACCGAGTGATGGAGAAGCAGACAGCTGTAACGGGACAGAGCAACTTGTGGATCTGGACTCCCATCAAGAGCCTCGTGATGCAATTGAGGTTGATAAAGAAGGCCAAGGTTTCCGTGGAAGAAAGGCTCCAAGGAATTCTATCTGGGAAAGGACACCTTTTGAGTGA

Predicted protein sequences of Glyma18g19720

Limit To All Plant Sequences

>Glyma18g19720.2   sequence type=predicted peptide   gene model=Glyma18g19720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSILSTVVTVRCGHCTSLLSVNMKKASLVPFHLLASLTHLEPKEGASEDGANKSLSSYNTSTMTNSDCEEENVTQISDFVHKPPEKRQRTPSAYNRFIKEEIKRLKAENPNMAHKEAFSTAAKNWANFPPSPSDGEADSCNGTEQLVDLDSHQEPRDAIEVDKEGQGFRGRKAPRNSIWERTPFE*

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