SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G23440 | AT | Annotation by Michelle Graham. TAIR10: Peptidase C15, pyroglutamyl peptidase I-like | chr1:8321940-8324019 FORWARD LENGTH=217 | SoyBase | E_val: 4.00E-115 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0046482 | GO-bp | Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008233 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidase activity | SoyBase | N/A | ISS |
| KOG4755 | KOG | Predicted pyroglutamyl peptidase | JGI | ISS | |
| PTHR23402 | Panther | PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED | JGI | ISS | |
| PF01470 | PFAM | Pyroglutamyl peptidase | JGI | ISS | |
| UniRef100_C6TEW2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TEW2_SOYBN | SoyBase | E_val: 4.00E-160 | ISS |
| UniRef100_Q9C5G6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidase C15, pyroglutamyl peptidase I-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9C5G6_ARATH | SoyBase | E_val: 2.00E-112 | ISS |
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Glyma18g19710 not represented in the dataset |
Glyma18g19710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g140300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g19710.2 sequence type=transcript gene model=Glyma18g19710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGTGGTATTATCATAAATATTTCCATCATCCAGTGGCAATTTTTACTTTACACGTCACAATAATAATGCCACAGGAGCAACCCCTCTTCTCTCTTTCTTTCTTCTTTTTCTTCAACATTGCTAAGTTAAAATAAAAATAAAAAGTCATCAAACTAAGCTTCTAACTTCTAAGTCACAGCAAAGCAGTGGCGTGAATTCCCAGGGGCAAACACAAAAAAAACAGGTTTGTTATTAAGATTTATCGAAAATTGGAAACTGCATCAGAATTCAGAACGAGGAGATGGGATCTGAAGGGCCAAGGGCCATTACTATTCATGTAACAGGATTTAAAAAGTTTCAAGGGGTTCCTGAAAACCCTACAGAAGCCATTGTGAATAATCTGAAGGAGTATGTTGAAAGGAGAGGCCTTCCTGCTGGTGTTACTCTTGGGAGTTGCACTGTGCTTGATGTGGCTGGGGATGGTGCACTTCCCCAGCTATATCAGACCATGGAATCTGCTATCTCCAAAACAGATAGTGTGAGCAATGCAAATGTTGTATGGCTTCACTTGGGGGTGAATAGTGGAGCTGTAAGGTTTGCCATTGAGCATCAGGCAGCAAATGAGGCCACTTTCCGCTGTCCAGATGAGTTAGGATGGCAACCTCAGCAACTACCAATAGTCCTTGAGGATGGAGGAATTTCTCAAACCAGAAAGACTTCTATGCACGTTGATGCAATCTTGAAATCCTTGAAGAAGGGAGCTTATGACGTGATGATATCAGGCAATGCAGGACGCTTTGTGTGCAACTATGTGTATTACCACTCCCTCCGATTTGCGGAACAGAAGGGTAACAAGTCTCTATTTGTCCATGTTCCCCTATTTGCAAGAATTGATCAAGAAACCCAGATGCGGTTTACAGCCTCTCTTTTGGATGCCATTGCTTCTGCATGTTAATGCAATACTGAATATGTTTACAAGGATTGCCATGTCCACTTGTATATCATCTGTCTCAAAGAGCAATGTAATTATAAAGCAATCTATGAATGAATGAACTGCAGAGTTCTTTTTTCTTTTCTTTTGGTAAGATGAGACTTTTACCATTCATAGCACGTCTTTAATGTATAATGCGTCCATACGTCTTAAACTCTACAAAAATTTCCTGGAAATTGCTGAAAATTTGGATCATTGTTAATATTTGGGTGTTATGCTAATGTTTTAAATGCTTTGTAACCAAGTTTCACACCCCC
>Glyma18g19710.1 sequence type=CDS gene model=Glyma18g19710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATCTGAAGGGCCAAGGGCCATTACTATTCATGTAACAGGATTTAAAAAGTTTCAAGGGGTTCCTGAAAACCCTACAGAAGCCATTGTGAATAATCTGAAGGAGTATGTTGAAAGGAGAGGCCTTCCTGCTGGTGTTACTCTTGGGAGTTGCACTGTGCTTGATGTGGCTGGGGATGGTGCACTTCCCCAGCTATATCAGACCATGGAATCTGCTATCTCCAAAACAGATAGTGTGAGCAATGCAAATGTTGTATGGCTTCACTTGGGGGTGAATAGTGGAGCTGTAAGGTTTGCCATTGAGCATCAGGCAGCAAATGAGGCCACTTTCCGCTGTCCAGATGAGTTAGGATGGCAACCTCAGCAACTACCAATAGTCCTTGAGGATGGAGGAATTTCTCAAACCAGAAAGACTTCTATGCACGTTGATGCAATCTTGAAATCCTTGAAGAAGGGAGCTTATGACGTGATGATATCAGGCAATGCAGGACGCTTTGTGTGCAACTATGTGTATTACCACTCCCTCCGATTTGCGGAACAGAAGGGTAACAAGTCTCTATTTGTCCATGTTCCCCTATTTGCAAGAATTGATCAAGAAACCCAGATGCGGTTTACAGCCTCTCTTTTGGATGCCATTGCTTCTGCATGTTAA >Glyma18g19710.2 sequence type=CDS gene model=Glyma18g19710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATCTGAAGGGCCAAGGGCCATTACTATTCATGTAACAGGATTTAAAAAGTTTCAAGGGGTTCCTGAAAACCCTACAGAAGCCATTGTGAATAATCTGAAGGAGTATGTTGAAAGGAGAGGCCTTCCTGCTGGTGTTACTCTTGGGAGTTGCACTGTGCTTGATGTGGCTGGGGATGGTGCACTTCCCCAGCTATATCAGACCATGGAATCTGCTATCTCCAAAACAGATAGTGTGAGCAATGCAAATGTTGTATGGCTTCACTTGGGGGTGAATAGTGGAGCTGTAAGGTTTGCCATTGAGCATCAGGCAGCAAATGAGGCCACTTTCCGCTGTCCAGATGAGTTAGGATGGCAACCTCAGCAACTACCAATAGTCCTTGAGGATGGAGGAATTTCTCAAACCAGAAAGACTTCTATGCACGTTGATGCAATCTTGAAATCCTTGAAGAAGGGAGCTTATGACGTGATGATATCAGGCAATGCAGGACGCTTTGTGTGCAACTATGTGTATTACCACTCCCTCCGATTTGCGGAACAGAAGGGTAACAAGTCTCTATTTGTCCATGTTCCCCTATTTGCAAGAATTGATCAAGAAACCCAGATGCGGTTTACAGCCTCTCTTTTGGATGCCATTGCTTCTGCATGTTAA
>Glyma18g19710.1 sequence type=predicted peptide gene model=Glyma18g19710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSEGPRAITIHVTGFKKFQGVPENPTEAIVNNLKEYVERRGLPAGVTLGSCTVLDVAGDGALPQLYQTMESAISKTDSVSNANVVWLHLGVNSGAVRFAIEHQAANEATFRCPDELGWQPQQLPIVLEDGGISQTRKTSMHVDAILKSLKKGAYDVMISGNAGRFVCNYVYYHSLRFAEQKGNKSLFVHVPLFARIDQETQMRFTASLLDAIASAC* >Glyma18g19710.2 sequence type=predicted peptide gene model=Glyma18g19710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSEGPRAITIHVTGFKKFQGVPENPTEAIVNNLKEYVERRGLPAGVTLGSCTVLDVAGDGALPQLYQTMESAISKTDSVSNANVVWLHLGVNSGAVRFAIEHQAANEATFRCPDELGWQPQQLPIVLEDGGISQTRKTSMHVDAILKSLKKGAYDVMISGNAGRFVCNYVYYHSLRFAEQKGNKSLFVHVPLFARIDQETQMRFTASLLDAIASAC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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