SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G23460 | AT | Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr1:8327382-8329622 FORWARD LENGTH=460 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0004650 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity | SoyBase | N/A | ISS |
| PTHR24015 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00295 | PFAM | Glycosyl hydrolases family 28 | JGI | ISS | |
| PF01535 | PFAM | PPR repeat | JGI | ISS | |
| UniRef100_F6HHV9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6HHV9_VITVI | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LQD1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F28C11.9 n=1 Tax=Arabidopsis thaliana RepID=Q9LQD1_ARATH | SoyBase | E_val: 0 | ISS |
|
Glyma18g19586 not represented in the dataset |
Glyma18g19586 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g139800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g19586.1 sequence type=CDS gene model=Glyma18g19586 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTTGCGTGGAATAAGAGAAAGCCCAACCACCTTCACCTCTGTTATAGCGGTTTGCACCAACGCTTTGTTTTTCAAAGAGGGTGTTCAGGTGCATTGCGGAGTGATCAAGTTCGGGTTTTCATGCAACGTGTTCATGGGTGATGCACTTGTCGGGTTCTACACACAGGTGGGGCAATGTGGGGTGGCACTGCAGTTGTTTGATGTGCCAGAGCGAAACTTGGCTGTGTGGAACGTGATGCTGCGTGGGTTGTGTGAACTGGGCCGTGTGAAAGTTGAAGACTTGTTGGGGTTTTACCTCTCTCGAATGCGTTTTGAAGTGTGGGGGAAAAAGTCATCAATTCGTTCTTGGGTGGGTTTGTTGAATTTGTGTAGTAGAAGTGGAGAGCTTTGTTTGGGGAAGCAGGTTCATTGTCGTGTGATGAAGTTGGGTTTTAATGAAGGGAGTGTGCATGTTCAATCTGCTTTGATTGATATGTATGGAAAGTGCAGGGACATTGAGAGTTCTGTGGCTGTATTTGAATGTCTTCCCGAGAGAACATTGGATTGTTTCAACTCATTGATGACCTCTTTGTCTTATTGTGATGCGGTTGATGATGTGGCTGAATTGTTTGGTTTGATGGTCGACGAAGGTCTTGTGCCGGATGGAGTTACCTTATCAACCACACTGAAGGCATTGTCAGTGTCTGCTTTAGCAAGTTTTACGAGTTCTCAGTTAATGCATTGTTATGCATTGAAATCTGGACTTGGAGAAGATGCTGTAGTTGCCTATTCTTCCTTCTCCAAACGCTTCACATCCATGATCAATGCATATGCCCGAAATGGAATGGGGAAAGAAGGAATTGCAATGCTTCAAGCAATGACTGAGAGGGGACTAAAGCCAGATGATGTTACCTTCTTATGTGCACTAAATGGTTGTAACCACACAGGATTAGTTGAGGAAGGAAGAATAGTCTTCGAATCGATGAAATCTCTTCATGGGGTCGATCCAGATCGCCGCCATTTTTCATGCACGATGGATCTCTTTTGCCGTGCAGGACTTCTACATGAAGCTGAAGAGTTTCTGCTACAGTCACAGGGAAAAGGAGAATATTTTATGTGGAGCTCTTTGTTAAGAAGTTGCAGGGTCCACAAGAATGAAGAGGTTGGAACAAAAGCAGCACAAGTGTTAGTTGAGCTAGATCCAGATGACCCTGCAGTGTGGTTGCAAGCTTCAAATTTTTATGCTGAAATAGGGAAATTTGATGCATCAAGGCAAATCAGAGAGGTTTCTCTAGCAAGGAAGATGACTAGGGAAATTGGTCATACTTATGGAGTTGCAGGAAGCATAATGTGTGACAACATTGGCATGCTCGAAGAACTTAAAAGCCTAGAGGCCCTGGACATAGAAGAAGAAGAAAATGAGGTAGAACTTTCTGACATCCCTTCATGGAGAAGCGAGCGCGGTGGAAAAGTTCTTGTGAATATTGATAGCTTTGGTGCTGCTGGAGATGGAGAATCTGATGATACTGAGGCTTTACAAAAAGCATGGGGAGTTGCATGCTCTACACCAAAATCTGTTTTGTTAATTCCTCAAGGACGCCGTTACCTTGTTAATGCAACAAGATTCAAAGGGCCTTGTGCAGACAAGCTCATCATCCAGATTGACGGTACATTGGTGGCACCAGATGAGCCTAAGAACTGGGATCCAAAACTGCCACGGGTTTGGCTTGATTTTTCCAAATTGAATAAAACTGTTTTCCAAGGTTCTGGAGTTATTGATGGCTCAGGCAGCAAATGGTGGGCAGCATCTTGTAAAAAGAACAAGTCCAATCCTTGCAAAGGTGCACCAACAGCATTTACGATTGATACAAGTTCATCCATAAGGGTGAAAGGACTAACAATCCAGAATAGCCAACAGATGCATTTTACCATATCACGATGCGATTCTGTTAGAATTACTAGCGTGAAAGTGTCAGCTCCTGGAGACAGCCCAAACACTGATGGAATTCATATTAGTGAATCAACAAATGTCATAATCCAAGACAGCAAAATTGGAACAGGGGATGATTGCATATCAATTGTCAATGCTAGCTCTAATATCAAAATGAAGAGAATTTATTGTGGACCAGGACATGGAATCAGCATTGGAAGTCTAGGGAAAGACAACTCAACAGGCATAGTCACGAAAGTGATTTTGGATACAGCAGTTCTTAGGGAGACTACCAACGGTGTCAGAATTAAGACTTGGCAGGGAGGTTCTGGATATGTTCGAGGGGTGCGTTTTCAGAATGTGAGGGTGGAAAATGTATCCAACCCCATTATCATAGACCAATTTTACTGTGATTCGCCAACCAGTTGTGAAAACCAGACAACAGCAGTGGAGATAAGCGAGGTGATGTACCAGAACATAAGTGGCACTACAATGAGTGCTAAGGCCATTAAATTTGACTGCAGTGACTCAGTCCCATGCAACAAACTAGTCCTTAGCAATGTGGACTTAGAGAAACAAGATGGCTCTGTTGAAACATATTGCCACTCAGCACAAGGCTTTCCCTATGGAGTGGTGCACCCTTCTGCTGATTGCCTTAGTTCCAGCGACAAAACCTCTCAAATTGAAGAATCAACTACAGAGGAAGAAGATATTCGTCACATTGAACTATAA
>Glyma18g19586.1 sequence type=predicted peptide gene model=Glyma18g19586 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLRGIRESPTTFTSVIAVCTNALFFKEGVQVHCGVIKFGFSCNVFMGDALVGFYTQVGQCGVALQLFDVPERNLAVWNVMLRGLCELGRVKVEDLLGFYLSRMRFEVWGKKSSIRSWVGLLNLCSRSGELCLGKQVHCRVMKLGFNEGSVHVQSALIDMYGKCRDIESSVAVFECLPERTLDCFNSLMTSLSYCDAVDDVAELFGLMVDEGLVPDGVTLSTTLKALSVSALASFTSSQLMHCYALKSGLGEDAVVAYSSFSKRFTSMINAYARNGMGKEGIAMLQAMTERGLKPDDVTFLCALNGCNHTGLVEEGRIVFESMKSLHGVDPDRRHFSCTMDLFCRAGLLHEAEEFLLQSQGKGEYFMWSSLLRSCRVHKNEEVGTKAAQVLVELDPDDPAVWLQASNFYAEIGKFDASRQIREVSLARKMTREIGHTYGVAGSIMCDNIGMLEELKSLEALDIEEEENEVELSDIPSWRSERGGKVLVNIDSFGAAGDGESDDTEALQKAWGVACSTPKSVLLIPQGRRYLVNATRFKGPCADKLIIQIDGTLVAPDEPKNWDPKLPRVWLDFSKLNKTVFQGSGVIDGSGSKWWAASCKKNKSNPCKGAPTAFTIDTSSSIRVKGLTIQNSQQMHFTISRCDSVRITSVKVSAPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSLGKDNSTGIVTKVILDTAVLRETTNGVRIKTWQGGSGYVRGVRFQNVRVENVSNPIIIDQFYCDSPTSCENQTTAVEISEVMYQNISGTTMSAKAIKFDCSDSVPCNKLVLSNVDLEKQDGSVETYCHSAQGFPYGVVHPSADCLSSSDKTSQIEESTTEEEDIRHIEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
