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Report for Sequence Feature Glyma18g19503

Feature Type:gene_model
Chromosome:Gm18
Start:21227483
stop:21232055
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g19503
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60550AT Annotation by Michelle Graham. TAIR10: enoyl-CoA hydratase/isomerase D | chr1:22305988-22308092 REVERSE LENGTH=337 SoyBaseE_val: 0ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009234GO-bp Annotation by Michelle Graham. GO Biological Process: menaquinone biosynthetic process SoyBaseN/AISS
GO:0042371GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin K biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008935GO-mf Annotation by Michelle Graham. GO Molecular Function: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity SoyBaseN/AISS
KOG1680 KOG Enoyl-CoA hydratase JGI ISS
PTHR11941Panther ENOYL-COA HYDRATASE-RELATED JGI ISS
PF00378PFAM Enoyl-CoA hydratase/isomerase family JGI ISS
UniRef100_Q8GYN9UniRef Annotation by Michelle Graham. Most informative UniRef hit: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal n=1 Tax=Arabidopsis thaliana RepID=MENB_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI000233E9B2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E9B2 related cluster n=1 Tax=unknown RepID=UPI000233E9B2 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g19503
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g19503 not represented in the dataset
Glyma18g19503 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g19503
ParalogEvidenceComments
Glyma08g39350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g19503 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g139700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g19503
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g19503
>Glyma18g19503.2   sequence type=transcript   gene model=Glyma18g19503   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATAATTAAAGAGACTGGACTGGATTTGCTGACATTTCCCTTTTCCCCCCTTACCCAGCTTCATTTCAACGACCTTATCTTATCCCCACCCGCCATGACACTTGCGACCTCTCTTGAATGTCAATGAATGAATGTATGTATAAAACAAACTAACAGCTTCACAATCTTTCTTGCACGCTCGCCATTGGTGATCACTTCCGATAGCTCTTAGAAACATCCAATCCAATGGCAGAGAACAACAACCACCACCATTTCGGAACCGCCATCAGAAGGCTCGCCTCTGTGACCAACCACCTCACTTCTTCTCACAACGCACCCGGCGAACTCGCCCTGTGCCGCACTTCCGGTAGGAGCGACAGCTTCCACCGCGTCCAGGGCCACGTCCCCTCCCACGACGTCGTTTGGAGGATCATCGCCTCCGACCACGACAACTCCGGCAAGGACTTCACCGACATTGTCTACGAGAAGGCCGTCGGGGAAGGAATAGCCAAGATAAGTATTAATAGGCCAGAGAGGAGGAATGCGTTCCGCCCCCACACGGTGAAGGAGCTTATGCGTGCTTTCACTGATGCCAGGGAAGATAGCTCTATTGGGGTCGTCATTCTCACTGGCAAGGGAACCGAGGCATTTTGTAGTGGTGGTGACCAGGCTTTGAGGACTGACAATGGCTATTCTGATAATGGAAGTTTCAGTAGCCTCAATGTGTTAGACTTGCAGGTGCAGATACGCCGCCTCCCTAAACCAGTGATTGCAATGGTAGCAGGTTATGCTGTTGGAGGAGGGCATGTATTACATATGGTCTGTGATCTAACTATTGCAGCAGATAATGCTATCTTTGGCCAAACTGGTCCCAAGGTAGGAAGCTTTGATGCTGGTTTTGGAAGTTCTATCATGTCTCGTTTGGTCCAAAAAAAGCACGTGAAATGTGGTTTCTCACAAGGTTCTATGATGCCGTTGAAGCAGAGAAAATGGGTCTTGTCAACACTGTTGTACCACTTGAGAATTTGGAGAAAGAAACGATAAAATGGTGTCGGGAGATACTGAGGAACAGTCCAACTGCTATTCGGGTGCTCAAGTCAGCTCTTAATGCAGTGGATGATGGCCATTCGGGACTTCAGGAAATTGGTGGAAATGCAACACTGATATACTATGGCACTGAAGAAGCTAAAGAGGGGAAGACTGCATATTTGCAACGTAGACGCCCTGATTTTTCTAAGTTCAATCGGCGACCTTAAATATGTCAATTGTTGCTATCAATTTGTGACATAGACCTACACTCTGCCCAATATATATATAGAGCAGAAAGTTGATTTGGGACCTGTTTACTATTGTCATTGATTTATTCGTTTCAAATGTATTTTTGAGGCTGGTGGTAAAATAAACAGATTTCTTATATTTAACTATTTTATTTTGTTTCTTAAAAAGATAGTAAATTTCAATAAATAAGACCATAGAATATACATTTCCA
Coding sequences of Glyma18g19503
>Glyma18g19503.1   sequence type=CDS   gene model=Glyma18g19503   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGAACAACAACCACCACCATTTCGGAACCGCCATCAGAAGGCTCGCCTCTGTGACCAACCACCTCACTTCTTCTCACAACGCACCCGGCGAACTCGCCCTGTGCCGCACTTCCGGTAGGAGCGACAGCTTCCACCGCGTCCAGGGCCACGTCCCCTCCCACGACGTCGTTTGGAGGATCATCGCCTCCGACCACGACAACTCCGGCAAGGACTTCACCGACATTGTCTACGAGAAGGCCGTCGGGGAAGGAATAGCCAAGATAAGTATTAATAGGCCAGAGAGGAGGAATGCGTTCCGCCCCCACACGGTGAAGGAGCTTATGCGTGCTTTCACTGATGCCAGGGAAGATAGCTCTATTGGGGTCGTCATTCTCACTGGCAAGGGAACCGAGGCATTTTGTAGTGGTGGTGACCAGGCTTTGAGGACTGACAATGGCTATTCTGATAATGGAAGTTTCAGTAGCCTCAATGTGTTAGACTTGCAGGTGCAGATACGCCGCCTCCCTAAACCAGTGATTGCAATGGTAGCAGGTTATGCTGTTGGAGGAGGGCATGTATTACATATGGTCTGTGATCTAACTATTGCAGCAGATAATGCTATCTTTGGCCAAACTGGTCCCAAGGTAGGAAGCTTTGATGCTGGTTTTGGAAGTTCTATCATGTCTCGTTTGGTAGGTCCAAAAAAAGCACGTGAAATGTGGTTTCTCACAAGGTTCTATGATGCCGTTGAAGCAGAGAAAATGGGTCTTGTCAACACTGTTGTACCACTTGAGAATTTGGAGAAAGAAACGATAAAATGGTGTCGGGAGATACTGAGGAACAGTCCAACTGCTATTCGGGTGCTCAAGTCAGCTCTTAATGCAGTGGATGATGGCCATTCGGGACTTCAGGAAATTGGTGGAAATGCAACACTGATATACTATGGCACTGAAGAAGCTAAAGAGGGGAAGACTGCATATTTGCAACGTAGACGCCCTGATTTTTCTAAGTTCAATCGGCGACCTTAA

>Glyma18g19503.2   sequence type=CDS   gene model=Glyma18g19503   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGAACAACAACCACCACCATTTCGGAACCGCCATCAGAAGGCTCGCCTCTGTGACCAACCACCTCACTTCTTCTCACAACGCACCCGGCGAACTCGCCCTGTGCCGCACTTCCGGTAGGAGCGACAGCTTCCACCGCGTCCAGGGCCACGTCCCCTCCCACGACGTCGTTTGGAGGATCATCGCCTCCGACCACGACAACTCCGGCAAGGACTTCACCGACATTGTCTACGAGAAGGCCGTCGGGGAAGGAATAGCCAAGATAAGTATTAATAGGCCAGAGAGGAGGAATGCGTTCCGCCCCCACACGGTGAAGGAGCTTATGCGTGCTTTCACTGATGCCAGGGAAGATAGCTCTATTGGGGTCGTCATTCTCACTGGCAAGGGAACCGAGGCATTTTGTAGTGGTGGTGACCAGGCTTTGAGGACTGACAATGGCTATTCTGATAATGGAAGTTTCAGTAGCCTCAATGTGTTAGACTTGCAGGTGCAGATACGCCGCCTCCCTAAACCAGTGATTGCAATGGTAGCAGGTTATGCTGTTGGAGGAGGGCATGTATTACATATGGTCTGTGATCTAACTATTGCAGCAGATAATGCTATCTTTGGCCAAACTGGTCCCAAGGTAGGAAGCTTTGATGCTGGTTTTGGAAGTTCTATCATGTCTCGTTTGGTCCAAAAAAAGCACGTGAAATGTGGTTTCTCACAAGGTTCTATGATGCCGTTGAAGCAGAGAAAATGGGTCTTGTCAACACTGTTGTACCACTTGAGAATTTGGAGAAAGAAACGATAA
Predicted protein sequences of Glyma18g19503
>Glyma18g19503.1   sequence type=predicted peptide   gene model=Glyma18g19503   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAENNNHHHFGTAIRRLASVTNHLTSSHNAPGELALCRTSGRSDSFHRVQGHVPSHDVVWRIIASDHDNSGKDFTDIVYEKAVGEGIAKISINRPERRNAFRPHTVKELMRAFTDAREDSSIGVVILTGKGTEAFCSGGDQALRTDNGYSDNGSFSSLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGFGSSIMSRLVGPKKAREMWFLTRFYDAVEAEKMGLVNTVVPLENLEKETIKWCREILRNSPTAIRVLKSALNAVDDGHSGLQEIGGNATLIYYGTEEAKEGKTAYLQRRRPDFSKFNRRP*

>Glyma18g19503.2   sequence type=predicted peptide   gene model=Glyma18g19503   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAENNNHHHFGTAIRRLASVTNHLTSSHNAPGELALCRTSGRSDSFHRVQGHVPSHDVVWRIIASDHDNSGKDFTDIVYEKAVGEGIAKISINRPERRNAFRPHTVKELMRAFTDAREDSSIGVVILTGKGTEAFCSGGDQALRTDNGYSDNGSFSSLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGFGSSIMSRLVQKKHVKCGFSQGSMMPLKQRKWVLSTLLYHLRIWRKKR*






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