Glyma18g19420 - SoyBase

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Report for Sequence Feature Glyma18g19420

Feature Type:	gene_model
Chromosome:	Gm18
Start:	21174093
stop:	21181216
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g19420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10630	AT	Annotation by Michelle Graham. TAIR10: ADP-ribosylation factor A1F \| chr1:3513189-3514230 REVERSE LENGTH=181	SoyBase	E_val: 7.00E-132	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0016004	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipase activator activity	SoyBase	N/A	ISS
KOG0070	KOG	GTP-binding ADP-ribosylation factor Arf1	JGI		ISS
PTHR11711	Panther	ARF-RELATED	JGI		ISS
PF00025	PFAM	ADP-ribosylation factor family	JGI		ISS
UniRef100_G8FGM3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor n=1 Tax=Elaeis guineensis RepID=G8FGM3_ELAGV	SoyBase	E_val: 8.00E-131	ISS
UniRef100_G8FGM3	UniRef	Annotation by Michelle Graham. Best UniRef hit: ADP-ribosylation factor n=1 Tax=Elaeis guineensis RepID=G8FGM3_ELAGV	SoyBase	E_val: 8.00E-131	ISS

Expression Patterns of Glyma18g19420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g19420

Paralog	Evidence	Comments
Glyma08g39360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g19420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g139400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g19420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g19420

Limit To All Plant Sequences

>Glyma18g19420.2   sequence type=transcript   gene model=Glyma18g19420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGAAATGAATATTGAGCTTTTTTCGCTGTTCAATTTGGGAACTGCTTCGTTTGTTTCCTTAGGGATCCACTAACTGAAGGAGCAATGGGGTTGACATTTACCAAGCTTTTTAGCCGGCTTTTCGCCAAGAAGGAAATGCGAATTCTAATGGTTGGTCTTGATGCCGCTGGTAAGACCACCATCCTGTACAAGCTCAAACTTGGAGAGATCGTTACCACAATTCCCACCATTGGGTTCAACGTGGAGACTGTGGAATACAAGAACATTAGTTTCACTGTCTGGGATGTTGGTGGCCAGGACAAGATTCGTCCCTTGTGGAGGCACTACTTCCAAAATACACAGGGTCTCATTTTTGTTGTTGACAGCAATGACAGGGACAGAGTTGTTGAGGCCAGAGATGAGTTGCACAGGATGTTGAATGAGGATGAACTGAGAGATGCAGTATTGCTTGTATTTGCTAACAAACAAGATCTTCCCAATGCAATGAATGCTGCTGAAATTACTGACAAGCTGGGACTCCACTCTCTCAGACAGCGCCACTGGTACATCCAGAGCACCTGTGCAACCTCTGGGGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCCAACAACATAGCCAATAAGGCTTGATGCTTTTTGGGTGTCTTGTGGATGCAGGGGTGAATATTATCTGGTTTTGTTTTTTGGTTCTCTTCTGAGACACATTGGCTTTATGTTCATGTTTTCTGGTTTAGGACATCTTGATGGCTAAAATTATAGCAGGAATTTGTTTCATGGGATGTCTAATACTTTTGAGTTTTTTTATTGGGCTTGGATTCAATGTTTATAACTGTAATTGATACCAATCAATGTGCCATCCCATTGAGCTTTTATTTTTTTATTTT

Coding sequences of Glyma18g19420

Limit To All Plant Sequences

>Glyma18g19420.1   sequence type=CDS   gene model=Glyma18g19420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTGACATTTACCAAGCTTTTTAGCCGGCTTTTCGCCAAGAAGGAAATGCGAATTCTAATGGTTGGTCTTGATGCCGCTGGTAAGACCACCATCCTGTACAAGCTCAAACTTGGAGAGATCGTTACCACAATTCCCACCATTGGGTTCAACGTGGAGACTGTGGAATACAAGAACATTAGTTTCACTGTCTGGGATGTTGGTGGCCAGGACAAGATTCGTCCCTTGTGGAGGCACTACTTCCAAAATACACAGGGTCTCATTTTTGTTGTTGACAGCAATGACAGGGACAGAGTTGTTGAGGCCAGAGATGAGTTGCACAGGATGTTGAATGAGGATGAACTGAGAGATGCAGTATTGCTTGTATTTGCTAACAAACAAGATCTTCCCAATGCAATGAATGCTGCTGAAATTACTGACAAGCTGGGACTCCACTCTCTCAGACAGCGCCACTGGTACATCCAGAGCACCTGTGCAACCTCTGGGGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCCAACAACATAGCCAATAAGGCTTGA

>Glyma18g19420.2   sequence type=CDS   gene model=Glyma18g19420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTGACATTTACCAAGCTTTTTAGCCGGCTTTTCGCCAAGAAGGAAATGCGAATTCTAATGGTTGGTCTTGATGCCGCTGGTAAGACCACCATCCTGTACAAGCTCAAACTTGGAGAGATCGTTACCACAATTCCCACCATTGGGTTCAACGTGGAGACTGTGGAATACAAGAACATTAGTTTCACTGTCTGGGATGTTGGTGGCCAGGACAAGATTCGTCCCTTGTGGAGGCACTACTTCCAAAATACACAGGGTCTCATTTTTGTTGTTGACAGCAATGACAGGGACAGAGTTGTTGAGGCCAGAGATGAGTTGCACAGGATGTTGAATGAGGATGAACTGAGAGATGCAGTATTGCTTGTATTTGCTAACAAACAAGATCTTCCCAATGCAATGAATGCTGCTGAAATTACTGACAAGCTGGGACTCCACTCTCTCAGACAGCGCCACTGGTACATCCAGAGCACCTGTGCAACCTCTGGGGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCCAACAACATAGCCAATAAGGCTTGA

Predicted protein sequences of Glyma18g19420

Limit To All Plant Sequences

>Glyma18g19420.1   sequence type=predicted peptide   gene model=Glyma18g19420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*

>Glyma18g19420.2   sequence type=predicted peptide   gene model=Glyma18g19420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*

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