Glyma18g19360 - SoyBase

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Report for Sequence Feature Glyma18g19360

Feature Type:	gene_model
Chromosome:	Gm18
Start:	21072339
stop:	21080604
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g19360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32180	AT	Annotation by Michelle Graham. TAIR10: pantothenate kinase 2 \| chr4:15538340-15543715 REVERSE LENGTH=783	SoyBase	E_val: 6.00E-175	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0015937	GO-bp	Annotation by Michelle Graham. GO Biological Process: coenzyme A biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004594	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pantothenate kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG2201	KOG	Pantothenate kinase PanK and related proteins	JGI		ISS
PTHR12280	Panther	PANTOTHENATE KINASE	JGI		ISS
PTHR12280:SF10	Panther	PANTOTHENATE KINASE 4	JGI		ISS
PF03630	PFAM	Fumble	JGI		ISS
UniRef100_B9SH97	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pantothenate kinase, putative n=1 Tax=Ricinus communis RepID=B9SH97_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E9B1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9B1 related cluster n=1 Tax=unknown RepID=UPI000233E9B1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g19360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g19360

Paralog	Evidence	Comments
Glyma08g39370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g19360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g139100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g19360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g19360

Limit To All Plant Sequences

>Glyma18g19360.1   sequence type=CDS   gene model=Glyma18g19360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTCAGAGAGGGTCAAACTCAACCAATTTTGGATCCTAACCAACCCTCTCATGTATATCATCTGGCTTTGGATATTGGAGGATCTCTTGCCAAGTTAGTATACTTCACAAAAGATGATGATCATTTGGTTGATGGCGAGGAGGGAATATCTCATAGAAAGGCTTTTGAAAAATCCAATGGCAGTAAGCAATATCCTGTTCTAAATGGGAGGCTCAATTTTAAGAAATTTGAAACAAGCAAGATAAATGATTGTATAGAGTTTATCAAGTCCATGAAACTTCACATTGGAGGTAGTCAGCCACAAGAAAATCCTGGAAGTCAGTCAATAGCTATTAAGGCCACAGGTGGTGGGGCGTACAAATATGCAGACCTTTTCAAGGAAAGACTGGGAATCATTTTTGACAAGGAAGATGAAATGGATTGTCTTGTTGCAGGAGCAAATTTTCTTCTTGAGGTGGTTCACCAGGAAGCATTTACCTATATGGGTGATCAAAAGCAATTTGTGCAGATTGATCAGAATGATCTGTATCCCTATCTTCTTGTTAATATTGGATCTGGTGTTGGCATGATTAAGGTGGAAGGAGAGGGAAAATTTGAGCGAGTTAGTGGAACAAGTATAGGCGGAGGCACTTTCTGGGGTTTAGGAAAGCTTTTAACTGAATGCAAGAGTTTTGATGAGCTGCTGGATTTAAGTTATCGGGGGAACAATAGAGCGGTAGATATGCTTGTTGGAGATATTTATGGTGGAATGGACTATTCAAAGATAGGTCTTTCATCCACTGCAATAGCTTCTAGTTTTGGAAAGGCAATTTCTGATAATAAGGAGCGTGAAGATTACAAACCTGAAGATATTGCTCGATCTCTTCTAAGAATGATCTCAAATAATATTGGACAGATCTCTTACTTAAATGCCCTTCGCTTTGGGATGAAGAGGATTTTTTTTGGTGGATTTTTTATTCGGAGGCACCCTTTTACTATGGACACATTATCTGTTGCTGTTAATTTCTGGTCTAAAGGTGAGGCTAAGGCAATGTTTTTGCGGCATGAAGGGTTTCTAGGAGGTGTAGGCGCTTTCATGAGTTCTGACAAACATGGCCTCAAGGAATTATTGGCCCATCAAGTGGTGCAAAGAAGTCTCAGCAAGTTATCCTTTGCCGTGGATAAAATATTGCATGGTTCACCAGATGGAGACTTTAATGGAGATGAAAGTATAGAGTGCAGTGTATATGCAGCTTAG

Predicted protein sequences of Glyma18g19360

Limit To All Plant Sequences

>Glyma18g19360.1   sequence type=predicted peptide   gene model=Glyma18g19360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLREGQTQPILDPNQPSHVYHLALDIGGSLAKLVYFTKDDDHLVDGEEGISHRKAFEKSNGSKQYPVLNGRLNFKKFETSKINDCIEFIKSMKLHIGGSQPQENPGSQSIAIKATGGGAYKYADLFKERLGIIFDKEDEMDCLVAGANFLLEVVHQEAFTYMGDQKQFVQIDQNDLYPYLLVNIGSGVGMIKVEGEGKFERVSGTSIGGGTFWGLGKLLTECKSFDELLDLSYRGNNRAVDMLVGDIYGGMDYSKIGLSSTAIASSFGKAISDNKEREDYKPEDIARSLLRMISNNIGQISYLNALRFGMKRIFFGGFFIRRHPFTMDTLSVAVNFWSKGEAKAMFLRHEGFLGGVGAFMSSDKHGLKELLAHQVVQRSLSKLSFAVDKILHGSPDGDFNGDESIECSVYAA*

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