Glyma18g19350 - SoyBase

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Report for Sequence Feature Glyma18g19350

Feature Type:	gene_model
Chromosome:	Gm18
Start:	21068664
stop:	21072357
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g19350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70480	AT	Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF220) \| chr1:26562304-26563608 FORWARD LENGTH=320	SoyBase	E_val: 3.00E-125	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009694	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02713	PFAM	Domain of unknown function DUF220	JGI		ISS
UniRef100_I1N1H4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N1H4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q38888	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OBP32pep (Fragment) n=1 Tax=Arabidopsis thaliana RepID=Q38888_ARATH	SoyBase	E_val: 4.00E-118	ISS

Expression Patterns of Glyma18g19350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g19350

Paralog	Evidence	Comments
Glyma08g39380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g19350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g139000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g19350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g19350

Limit To All Plant Sequences

>Glyma18g19350.1   sequence type=CDS   gene model=Glyma18g19350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGTGACTCAGAGATGACAAAATTCGGCTTAAAAGTCGGGAAGAATGGGTTTCCAAGGGGACTAGATCCTGCAATATCCAAGTTTTTTGTGCAGCTCCAAATTGTTGTTAAGTCACAGCTGAGTAGATTAGCAAAACAGGATGGAATGAGTTTGATGAGATCCGTCCAAAGAAAAGGGGGGTCTTTCAGTTACTCTGAAGCTGAACTGAATGAGCAACTGCAAGCATGGAGAGAAAATCCATCTTGGGTCGACAAGCCTCCACTAATAAAGGTCACTGTTCCCAAAGGTTCTCTTTGCAACCTTGATGTAGAAGTTGATGTTGGGCTGCCCCCTGATGCAGTATATAATATAGTGATAGATCCTGACAATAGGCGAGTTTTCAAAAATATCAAAGAAGTGGTATCCAGAAAAGTTTTGGTTGATCAGGGTCATAGGCAAGTGGTTGATCTTGACCAAGCAGCCATTTGGAAATTTCTTTGGTGGTCCGGGACTATATCGATTAATGTTTTGGTAGATCAAAACAGAAAAGACCACTCTATGAAGTTCATGCAAACCAAGGCTGGATTCATGAAAAAATTTGAGGGCTGCTGGAGGGTAGAGCCTTTATTTGTTGATGAAGCAATGTGCCATCCCTTTAAGCCGGTGACGAAGGAAGACTATAATGCATGTACAAGAGGCAAAGGAAGAATTGGATCTAAAGTTAGCCTGGAACAAATACTTCAGCCATCCATTGTCCCTCCCCCTCCCCTATCATGGTATTTGAGGGGAATTACTGCCCGGACAACTGAGATGCTTATAAACGATATGCTTGCAGAAACTGCTAGAATCAGAGGTGGATATGAGGCTGAAAAGTCTAAGGCAGAGGAGCTTCAGGTAAAACCTGGTGAAAATGTGGACCTGGTTTCTAACACAAGTGACATTAAAGAAAGCTGGAAATTGCGTAGAAAAAATGCAAAGCAGAGTCACAGAAGCCTTCTGACCAAGTGA

Predicted protein sequences of Glyma18g19350

Limit To All Plant Sequences

>Glyma18g19350.1   sequence type=predicted peptide   gene model=Glyma18g19350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGDSEMTKFGLKVGKNGFPRGLDPAISKFFVQLQIVVKSQLSRLAKQDGMSLMRSVQRKGGSFSYSEAELNEQLQAWRENPSWVDKPPLIKVTVPKGSLCNLDVEVDVGLPPDAVYNIVIDPDNRRVFKNIKEVVSRKVLVDQGHRQVVDLDQAAIWKFLWWSGTISINVLVDQNRKDHSMKFMQTKAGFMKKFEGCWRVEPLFVDEAMCHPFKPVTKEDYNACTRGKGRIGSKVSLEQILQPSIVPPPPLSWYLRGITARTTEMLINDMLAETARIRGGYEAEKSKAEELQVKPGENVDLVSNTSDIKESWKLRRKNAKQSHRSLLTK*

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