Report for Sequence Feature Glyma18g19100
Feature Type: gene_model
Chromosome: Gm18
Start: 20858053
stop: 20865070
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g19100
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G70460 AT
Annotation by Michelle Graham. TAIR10: root hair specific 10 | chr1:26556155-26558994 FORWARD LENGTH=710
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0048765 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation
SoyBase N/A ISS
GO:0051510 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1187
KOG
Serine/threonine protein kinase
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF644 Panther
JGI ISS
PF07714 PFAM
Protein tyrosine kinase
JGI ISS
UniRef100_E5GBJ3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase family protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBJ3_CUCME
SoyBase E_val: 0 ISS
UniRef100_I1N1H0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N1H0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g19100
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g19100
Paralog Evidence Comments
Glyma08g39480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g19100 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g138700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g19100
Coding sequences of Glyma18g19100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g19100.2 sequence type=CDS gene model=Glyma18g19100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGCCACCACCATCTAAATATTTAAGTCCACCACCATCACCGCGACCGCCACCTCTACCATTACCATCACCATCACTGCGACCACCCTCACCATTGCCGCCATCACCACCACCACCCTCATTGCCACCACCTTCATCGCCACCACCGCCACAATCACAATCAGTGCCGTTGCGCAATGGCAATCCTTCTCCTCCTCCTCCTCCTCCTTATTATCCACGTAAACAGTGGCCACCACCGTTGCAACCATTATCGTCGCCACCACAATTCCGTGCTCCACCTCCCCCTGATAGACCTTCTTCGCGGCGTAATGCACCCTCCAATGATTCAACCCAGGGAACCTCTGAGAAGTCACGATCAGGTCACCATAAGCATGGTGTTGCTTCCCATACAAACTCAACAGGTTCTTCTCCCAATCAAACCTCTTCTGGTGATAATTCAGGAAAATATGTTGGTTACACACTCGCTGGGATTTTTGCTGTTGCCTTGGTTGCTGTAGCTGTAGCTCTTGTTTTCGTGTTTAAGAAGAAAAAATCAAGAAGGGATGCCTATACTACACCCTATATGCCACCCTTTAAAATTCATGTAAAATCAGGTGCTAATGGGCATTACTATGTACAGCAGCCTATCCCATCGCCTCCCCTTGCAAACAACTATGGAAATGGGAATATGAGCATGCAACATTTAGGCGCTTCTTTCGACTCAGCTCAGTTCAAAAGTGTTCAGATAGTTTTTACCTATGAAATGGTTATGGAAATGACCAATGCATTTTCTACTCAAAATGTTATTGGGGAAGGAGGGTTTGGGTGTGTTTACAAAGGTTGGCTGCCAGATGGAAAAACAGTTGCAGTAAAGCAGCTTAAGGCTGGCAGTGGACAGGGAGAAAGGGAATTCAAGGCTGAAGTGGAGATCATCAGCCGTGTTCATCATCGACATTTGGTGGCATTAGTTGGTTATTGCATATGTGAGCAGCAAAGAATTCTTATCTATGAGTATGTTCCTAATGGAACACTCCATCATCACTTGCATGAAAGTGGAATGCCGGTGTTAGATTGGGCCAAGAGGCTAAAGATTGCAATAGGTGCTGCAAAGGGCCTAGCATATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATAAAGTCCGCAAACATACTTTTGGATAATGCTTATGAGGCACAGGTTGCTGACTTTGGACTTGCGAGGTTAGCTGATGCTGCCAATACCCATGTATCAACTAGGGTCATGGGAACCTTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACAGACAGATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTGTAACGGGAAGGAAACCCGTTGATCAAACTCAGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATTGAGACACGTGATTTTAGTGATCTAACAGATCCAAGACTCAAAAAACACTTTGTGGAGAGTGAAATGTTCAGAATGATTGAGGCAGCTGCAGCTTGTGTTCGCCACTCTGCTCTTAGACGGCCTCGTATGGTTCAGGTGGTAAGAGCCTTGGACTGTGGAGACGAAAGTTCTGATATATCTAATGGGATGAAATATGGTCATAGCACGGTTTATGATTCTGGCCAATATGATAAAGCAATTATGCTATTCAGGAGGATGGCCAATGGCAACTTTGATGATTCTGATTTTGATATGGTAAGTAGAGAATACAGTTTGTCAAGAGACACCTCAATGACCTCAAGAGGATCCCAACAAGAATTGATACAGCATAGTTCTAGTGGCGAGTTTGATTCTAGAGATATCAACATGCATAGGAGCAGTATTGAATGA
Predicted protein sequences of Glyma18g19100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g19100.2 sequence type=predicted peptide gene model=Glyma18g19100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSPPPSKYLSPPPSPRPPPLPLPSPSLRPPSPLPPSPPPPSLPPPSSPPPPQSQSVPLRNGNPSPPPPPPYYPRKQWPPPLQPLSSPPQFRAPPPPDRPSSRRNAPSNDSTQGTSEKSRSGHHKHGVASHTNSTGSSPNQTSSGDNSGKYVGYTLAGIFAVALVAVAVALVFVFKKKKSRRDAYTTPYMPPFKIHVKSGANGHYYVQQPIPSPPLANNYGNGNMSMQHLGASFDSAQFKSVQIVFTYEMVMEMTNAFSTQNVIGEGGFGCVYKGWLPDGKTVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVALVGYCICEQQRILIYEYVPNGTLHHHLHESGMPVLDWAKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDNAYEAQVADFGLARLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDQTQPLGDESLVEWARPLLLRAIETRDFSDLTDPRLKKHFVESEMFRMIEAAAACVRHSALRRPRMVQVVRALDCGDESSDISNGMKYGHSTVYDSGQYDKAIMLFRRMANGNFDDSDFDMVSREYSLSRDTSMTSRGSQQELIQHSSSGEFDSRDINMHRSSIE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
