Glyma18g19080 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma18g19080): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma18g19080): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma18g19080

Feature Type:	gene_model
Chromosome:	Gm18
Start:	20796970
stop:	20803168
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g19080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14740	AT	Annotation by Michelle Graham. TAIR10: carbonic anhydrase 2 \| chr5:4760536-4762382 FORWARD LENGTH=259	SoyBase	E_val: 1.00E-82	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009595	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009814	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0015976	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbon utilization	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0043900	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004089	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbonate dehydratase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR11002	Panther	CARBONIC ANHYDRASE	JGI		ISS
PTHR11002:SF1	Panther	CARBONIC ANHYDRASE-RELATED	JGI		ISS
PF00484	PFAM	Carbonic anhydrase	JGI		ISS
UniRef100_I1KXF8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Carbonic anhydrase n=1 Tax=Glycine max RepID=I1KXF8_SOYBN	SoyBase	E_val: 3.00E-114	ISS
UniRef100_UPI000233EAF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EAF9 related cluster n=1 Tax=unknown RepID=UPI000233EAF9	SoyBase	E_val: 7.00E-118	ISS

Expression Patterns of Glyma18g19080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g19080 not represented in the dataset	Glyma18g19080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g19080

Paralog	Evidence	Comments
Glyma08g39510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g19080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g138400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g19080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g19080

Limit To All Plant Sequences

>Glyma18g19080.2   sequence type=transcript   gene model=Glyma18g19080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTACTACCTCATACGAGTCATACCACAGTCCCGAAGTGGAAGAAAAATATACTTACAAAGATACAAACCTTCCAATTAAGGCCATTTCTTTGTATTTAAATTTTCGCTTTGGGTCATAAATTATTAATACCCGGCATCGATGACACACAATACGTGAGTTCTGGTCCCTCTTCTTCCTCTAGCTAGATAGCGCGTGGAACAAAACAAAAACCTCATCATCCATATAAACTCACACTCCTATCACCACCTCTATCACAATCTCTCTGATCACTACTCTCTGTTCTCAAGAACAAAACAAAAGAAGAAAGAAATGGCAGGAGGATCATACGAGGAAGCCATTGCAGCGTTGACCAAGCTTATCAGCGAGAAAGCCGACCTGAGTGGCGTCGCCGCCGCAAAGATCAAGCAGTTGACGGCGGAGCTAGAAACCGCCACCGCAAACGGGTCGACGCCGTTTAACCCAGACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATTCCAGAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAGATTTTGTTGTCAATCGTACGCATGCGTGAACTATTATTCCACTATTTTATGGTGTTTGCTTGCTCAGACTCTCGAGTTTGCCCATCCCACATTCTGGATTTCAATCCGGGTGAAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGACCAAGTATTCAGGAACAGGGGCGGCCATTGAATATGCTGTCGTACATTTAAAGGTGGAGAATATTGTGGTCATTGGACACAGCTGCTGTGGAGGTATAAAGGGCCTCATGTCTATCCCAGATGATGGGACCACTGCAAGGTAAAAGTCTACCTTATTATTGGTTGCATCTCATCAATGAAAGATTAAATAATTTTGCCAAAAGGATGATGAGTACTCAAAGTACATATGTTTTATATAACCAAAATCAAAAGTACATGTCCATTAAAAAAAAGAACATTAAACTATTTTGGTTAACTTTTCAGAATCTCCA

>Glyma18g19080.3   sequence type=transcript   gene model=Glyma18g19080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTACTACCTCATACGAGTCATACCACAGTCCCGAAGTGGAAGAAAAATATACTTACAAAGATACAAACCTTCCAATTAAGGCCATTTCTTTGTATTTAAATTTTCGCTTTGGGTCATAAATTATTAATACCCGGCATCGATGACACACAATACGTGAGTTCTGGTCCCTCTTCTTCCTCTAGCTAGATAGCGCGTGGAACAAAACAAAAACCTCATCATCCATATAAACTCACACTCCTATCACCACCTCTATCACAATCTCTCTGATCACTACTCTCTGTTCTCAAGAACAAAACAAAAGAAGAAAGAAATGGCAGGAGGATCATACGAGGAAGCCATTGCAGCGTTGACCAAGCTTATCAGCGAGAAAGCCGACCTGAGTGGCGTCGCCGCCGCAAAGATCAAGCAGTTGACGGCGGAGCTAGAAACCGCCACCGCAAACGGGTCGACGCCGTTTAACCCAGACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATTCCAGAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAGATTTTGTTGTCAATCGTACGCATGCGTGAACTATTATTCCACTATGTAATCGTCTTATCAGGAAACGGTCTTCTTCGTCATTCTCTTTTGTCTTTTTTTTTTTTAATCTATGCATTTATGACTTTTGATATTCATACATATATAGTTCTCATTGCAATTTTATATTACTTGAATATCTAATATGTTCTACTAGTTTGAAACTGGCAGTCCGTGTCTAGGCATTCCCTGTCTTAAAAGATGTATATAACTACTATGTTTGAGGAATTATCTTTTATAACAATGGTCAGATTAGAGGTAGTTTTTATAATTAGTTAGAGGACAGAATCGTTTATAATGTGTACACGAAATGAAATAATTATCTTTATAATAGTTATATATTAAGCATTGAGAACATTATGTTTTTTAAGAAAAATAGGGTTTGACTTAATTATTTTTTAAGTTTTTTCTTTCTTTT

Coding sequences of Glyma18g19080

Limit To All Plant Sequences

>Glyma18g19080.1   sequence type=CDS   gene model=Glyma18g19080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGAGGATCATACGAGGAAGCCATTGCAGCGTTGACCAAGCTTATCAGCGAGAAAGCCGACCTGAGTGGCGTCGCCGCCGCAAAGATCAAGCAGTTGACGGCGGAGCTAGAAACCGCCACCGCAAACGGGTCGACGCCGTTTAACCCAGACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATTCCAGAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAGTTTATGGTGTTTGCTTGCTCAGACTCTCGAGTTTGCCCATCCCACATTCTGGATTTCAATCCGGGTGAAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGACCAAGTATTCAGGAACAGGGGCGGCCATTGAATATGCTGTCGTACATTTAAAGGTGGAGAATATTGTGGTCATTGGACACAGCTGCTGTGGAGGTATAAAGGGCCTCATGTCTATCCCAGATGATGGGACCACTGCAAGGTAA

>Glyma18g19080.2   sequence type=CDS   gene model=Glyma18g19080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGAGGATCATACGAGGAAGCCATTGCAGCGTTGACCAAGCTTATCAGCGAGAAAGCCGACCTGAGTGGCGTCGCCGCCGCAAAGATCAAGCAGTTGACGGCGGAGCTAGAAACCGCCACCGCAAACGGGTCGACGCCGTTTAACCCAGACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATTCCAGAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAGATTTTGTTGTCAATCGTACGCATGCGTGAACTATTATTCCACTATTTTATGGTGTTTGCTTGCTCAGACTCTCGAGTTTGCCCATCCCACATTCTGGATTTCAATCCGGGTGAAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGACCAAGTATTCAGGAACAGGGGCGGCCATTGAATATGCTGTCGTACATTTAAAGGTGGAGAATATTGTGGTCATTGGACACAGCTGCTGTGGAGGTATAAAGGGCCTCATGTCTATCCCAGATGATGGGACCACTGCAAGGTAA

>Glyma18g19080.3   sequence type=CDS   gene model=Glyma18g19080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGAGGATCATACGAGGAAGCCATTGCAGCGTTGACCAAGCTTATCAGCGAGAAAGCCGACCTGAGTGGCGTCGCCGCCGCAAAGATCAAGCAGTTGACGGCGGAGCTAGAAACCGCCACCGCAAACGGGTCGACGCCGTTTAACCCAGACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATTCCAGAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAGATTTTGTTGTCAATCGTACGCATGCGTGAACTATTATTCCACTATGTAATCGTCTTATCAGGAAACGGTCTTCTTCGTCATTCTCTTTTGTCTTTTTTTTTTTTAATCTATGCATTTATGACTTTTGATATTCATACATATATAGTTCTCATTGCAATTTTATATTACTTGAATATCTAA

Predicted protein sequences of Glyma18g19080

Limit To All Plant Sequences

>Glyma18g19080.1   sequence type=predicted peptide   gene model=Glyma18g19080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGSYEEAIAALTKLISEKADLSGVAAAKIKQLTAELETATANGSTPFNPDERIRTGFAHFKNEKFQKNPELYGELAKGQSPKFMVFACSDSRVCPSHILDFNPGEAFVVRNIANMVPPYDKTKYSGTGAAIEYAVVHLKVENIVVIGHSCCGGIKGLMSIPDDGTTAR*

>Glyma18g19080.2   sequence type=predicted peptide   gene model=Glyma18g19080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGSYEEAIAALTKLISEKADLSGVAAAKIKQLTAELETATANGSTPFNPDERIRTGFAHFKNEKFQKNPELYGELAKGQSPKILLSIVRMRELLFHYFMVFACSDSRVCPSHILDFNPGEAFVVRNIANMVPPYDKTKYSGTGAAIEYAVVHLKVENIVVIGHSCCGGIKGLMSIPDDGTTAR*

>Glyma18g19080.3   sequence type=predicted peptide   gene model=Glyma18g19080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGSYEEAIAALTKLISEKADLSGVAAAKIKQLTAELETATANGSTPFNPDERIRTGFAHFKNEKFQKNPELYGELAKGQSPKILLSIVRMRELLFHYVIVLSGNGLLRHSLLSFFFLIYAFMTFDIHTYIVLIAILYYLNI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain