SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G70370 | AT | Annotation by Michelle Graham. TAIR10: polygalacturonase 2 | chr1:26513003-26514998 REVERSE LENGTH=626 | SoyBase | E_val: 0 | ISS |
| GO:0000271 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0007389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pattern specification process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0008361 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell size | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0009932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell tip growth | SoyBase | N/A | ISS |
| GO:0010015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root morphogenesis | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels | SoyBase | N/A | ISS |
| GO:0040007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: growth | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048653 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anther development | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0004650 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity | SoyBase | N/A | ISS |
| PF03181 | PFAM | BURP domain | JGI | ISS | |
| UniRef100_G7K1D9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase-1 non-catalytic subunit beta n=1 Tax=Medicago truncatula RepID=G7K1D9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N1G3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1G3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g18980 not represented in the dataset |
Glyma18g18980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g39700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g138000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g18980.1 sequence type=CDS gene model=Glyma18g18980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACAACATGAGCACTCTCGTTTTCTTTATCCTTCTTTCAACGCTACTAAGTGTTTGTTACGGTGGTCGCGACTTAGTAGATAAAAACCCGTTCACCGAGCAGGCTTACGTGGCACGCTACTGGGACAAACATGTTGGCAACAACTTGCCAAAGCCATCGTTTCTTCTCTCCAAAGCCTCTCCAATGAGCGCTTCCGACACGGCGTCGTTCGCGAACCTCGCCGCCACCAACTCCCTCTCCACGCGGCTGCCGGAGTTCTGCTCCGCGGCGCACCTCCTCTGCTTCCCGGAGGTCCGGCCCAGCCTCGAGAAACACACCGGAGACTCCGATTTCCAGACCTACAACGACGGCCAGAACTTCACCAACTACGGCACCGACTTCGCCGGCGGCCTCGACACCTTCAAGAACTACTCCAACGACCTCTTCAGCACTCCGGTGAACGACTTCCGCCGCTACAGCCGCGGCGCCGCCGGCCACGAGGAAAGATTTTCCGCCTACGCCGGCGACACCAACGTCGCCGACCAGAGCTTCAGCACCTACGGCACCAACGCCGGCGGCGGCTCCGGCGAGTTCAAAAACTACTCCCGCAACTCCAACGTCCCCGACCTACGCTTCACCACCTACTCCGACAGCACCGGCGGGAGAACGCAATCGTTCTCCAGCTACAGCGAAGACGGCAACGCCGGCGGCCAGACCTTCCAATCCTACGGAAAGAACTCCGCCGGCGCGGCGAACGACTTCGCCGCCTACGGCACAGACTCCAACGTCGCCTCTTCAGATTTCACGAACTACGGAAAGGGAGGTGCGGGCCCCAACGACACGTTCACGAATTACGGCGTTAACATGAACAACCCTACGGAGACGTTTCAGAGCTACGCAGACGGAACCGTTGGTGGAACGCAGAGTTTTTCCAACTACAGAGACCAAGCTAACGTAGGTGCTGACTCGTTCCAATCCTACGCTAAGAACACGTTAGGGTCCGAAGCGGATTTTAAAAACTACGGGAATTCGTTCAACCCTGGTTCGGACACTTTCAAAGGCTACGCTAAAGGCGCAGAAGATAACAAGGTTGGCTTCACAACCTACAGCGCTAACACAAACGCTACCTTTAAAGATTACGCCAAACACGGCGTTTCCTTTGCTAGTTACAACGTCTCTTCGGAATCTAAAACAGTCAGTAGCAGTGTGGTAAAAAGGTGGGTTGAACCGGGTAAGTTTTTTCGCGAGACCATGCTTAAGGAAGGCACTGTTATGCCCATGCCCGATATAAGGGATAAGATGCCGAAAAGGTCGTTTTTGCCCCGCGCTATTTTAACCAAATTGCCCTTCTCGTCTGCGAAGGTTGACGAGTTGAAGCGTGTGTTTAAGGTGTCTGAGAACTCATCAATGGACAAAATGATCATGGACTCGTTGGGAGAGTGCGAGAGGGCACCCAGCGTGGGTGAGACCAAACGCTGTGTGGCTTCCGTGGAGGACATGATTGACTTTTCAACCTCCGTTTTGGGCCGGAATGTGGCAGTTTGGACCACAGAGAATGTAAAAGGGTCCAATAAGAATGTGATGGTGGGTCGGGTTAAAGGGATGAATGGTGGGAAGGTGACAAAATCGGTGTCGTGCCACCAGAGCTTGTTCCCTTATTTGCTTTACTACTGCCACTCCGTTCCTAAGGTTCGGGTCTACGAAGCGGATCTTTTGGACCCCGAATCTAAGGCCAAGATTAACCACGGTGTTGCTATCTGCCACTTGGACACAACTGCGTGGAGCCCCACCCACGGTGCATTCTTGGCACTCGGGTCGGGTCCGGGTAGGATTGAAGTGTGTCACTGGATCTTCGAGAATGACTTGACATGGACTATTGCTGACTGA
>Glyma18g18980.1 sequence type=predicted peptide gene model=Glyma18g18980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHNMSTLVFFILLSTLLSVCYGGRDLVDKNPFTEQAYVARYWDKHVGNNLPKPSFLLSKASPMSASDTASFANLAATNSLSTRLPEFCSAAHLLCFPEVRPSLEKHTGDSDFQTYNDGQNFTNYGTDFAGGLDTFKNYSNDLFSTPVNDFRRYSRGAAGHEERFSAYAGDTNVADQSFSTYGTNAGGGSGEFKNYSRNSNVPDLRFTTYSDSTGGRTQSFSSYSEDGNAGGQTFQSYGKNSAGAANDFAAYGTDSNVASSDFTNYGKGGAGPNDTFTNYGVNMNNPTETFQSYADGTVGGTQSFSNYRDQANVGADSFQSYAKNTLGSEADFKNYGNSFNPGSDTFKGYAKGAEDNKVGFTTYSANTNATFKDYAKHGVSFASYNVSSESKTVSSSVVKRWVEPGKFFRETMLKEGTVMPMPDIRDKMPKRSFLPRAILTKLPFSSAKVDELKRVFKVSENSSMDKMIMDSLGECERAPSVGETKRCVASVEDMIDFSTSVLGRNVAVWTTENVKGSNKNVMVGRVKGMNGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDPESKAKINHGVAICHLDTTAWSPTHGAFLALGSGPGRIEVCHWIFENDLTWTIAD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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