Report for Sequence Feature Glyma18g18880
Feature Type: gene_model
Chromosome: Gm18
Start: 20363135
stop: 20367800
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g18880
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G23820 AT
Annotation by Michelle Graham. TAIR10: spermidine synthase 1 | chr1:8420278-8422724 FORWARD LENGTH=378
SoyBase E_val: 0 ISS
GO:0008295 GO-bp
Annotation by Michelle Graham. GO Biological Process: spermidine biosynthetic process
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004766 GO-mf
Annotation by Michelle Graham. GO Molecular Function: spermidine synthase activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG1562
KOG
Spermidine synthase
JGI ISS
PTHR11558 Panther
SPERMIDINE SYNTHASE
JGI ISS
PTHR11558:SF11 Panther
PUTRESCINE N-METHYLTRANSFERASE
JGI ISS
PF01564 PFAM
Spermine/spermidine synthase
JGI ISS
UniRef100_A0EVX4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Spermidine synthase n=1 Tax=Ammopiptanthus mongolicus RepID=A0EVX4_9FABA
SoyBase E_val: 0 ISS
UniRef100_I1N1F7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1F7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g18880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g18880
Paralog Evidence Comments
Glyma08g39810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g18880 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g137100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g18880
Coding sequences of Glyma18g18880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g18880.1 sequence type=CDS gene model=Glyma18g18880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGATGAGAGCGTCGTTGAGTCCCCAGTGAAGAGGCAGAGAGATGATGATGAAGAAAATGAGGTCTCTGTTTCCATGGATGTGGAGGGTGGCAAAGACCCTCTTAGTAACGGTTTATCATCTGTGATTCCTGGGTGGTTCTCTGAAATTAGTTCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGAATACCAGAATGTCATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTTGTTTTAGATGGAGTAATTCAGCTAACAGAAAGGGATGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATCGGTGGAGGTGATGGAGGGGTCATACGAGAAGTAGCACACCATTCTTCAGTTGAAAAGATAGACATTTGTGAAATTGACAAGATGGTTGTTGATGTCTCCAAACAATACTTCCCTGATGTAGCTGTTGGGTATGATGATCCTCGTGTGACACTTCATATTGGTGATGGAGTTGCATTTCTGAAGGAAGTTCCTGAAGGAACTTATGATGCTGTTATAGTGGATTCATCCGATCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTCTTTTCGTCAGTTGCAAAGGCTCTTCGTCCAGGTGGAGTTGTGTGCACTCAGGCAGAAAGCATATGGCTTCATATGGATATAATTGAGGACATTGTGGCTAATTGTCGCCAGATTTTTAAAGGCTCTGTCAACTATGCTTGGACTACTGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCACCTGTTGATTTCAAGCATCCAGTGAATCCCATAGATGAAAATGAGAGTCAGAAGTCAGTAAGACCGCTGAAATTTTACAACTCTGAGATTCATACCGCAGCTTTCTGCTTGCCGTCGTTTGCGAAGAGGAAGATTGGTTCTAAAGCAAATTAA
Predicted protein sequences of Glyma18g18880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g18880.1 sequence type=predicted peptide gene model=Glyma18g18880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MADESVVESPVKRQRDDDEENEVSVSMDVEGGKDPLSNGLSSVIPGWFSEISSMWPGEAHSLKVEKILFQGKSEYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVIREVAHHSSVEKIDICEIDKMVVDVSKQYFPDVAVGYDDPRVTLHIGDGVAFLKEVPEGTYDAVIVDSSDPIGPAQELFEKPFFSSVAKALRPGGVVCTQAESIWLHMDIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDENESQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSKAN*