Glyma18g18880 - SoyBase

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Report for Sequence Feature Glyma18g18880

Feature Type:	gene_model
Chromosome:	Gm18
Start:	20363135
stop:	20367800
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g18880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23820	AT	Annotation by Michelle Graham. TAIR10: spermidine synthase 1 \| chr1:8420278-8422724 FORWARD LENGTH=378	SoyBase	E_val: 0	ISS
GO:0008295	GO-bp	Annotation by Michelle Graham. GO Biological Process: spermidine biosynthetic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004766	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermidine synthase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1562	KOG	Spermidine synthase	JGI		ISS
PTHR11558	Panther	SPERMIDINE SYNTHASE	JGI		ISS
PTHR11558:SF11	Panther	PUTRESCINE N-METHYLTRANSFERASE	JGI		ISS
PF01564	PFAM	Spermine/spermidine synthase	JGI		ISS
UniRef100_A0EVX4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Spermidine synthase n=1 Tax=Ammopiptanthus mongolicus RepID=A0EVX4_9FABA	SoyBase	E_val: 0	ISS
UniRef100_I1N1F7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1F7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g18880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g18880

Paralog	Evidence	Comments
Glyma08g39810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g18880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g137100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g18880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g18880

Limit To All Plant Sequences

>Glyma18g18880.1   sequence type=CDS   gene model=Glyma18g18880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATGAGAGCGTCGTTGAGTCCCCAGTGAAGAGGCAGAGAGATGATGATGAAGAAAATGAGGTCTCTGTTTCCATGGATGTGGAGGGTGGCAAAGACCCTCTTAGTAACGGTTTATCATCTGTGATTCCTGGGTGGTTCTCTGAAATTAGTTCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGAATACCAGAATGTCATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTTGTTTTAGATGGAGTAATTCAGCTAACAGAAAGGGATGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATCGGTGGAGGTGATGGAGGGGTCATACGAGAAGTAGCACACCATTCTTCAGTTGAAAAGATAGACATTTGTGAAATTGACAAGATGGTTGTTGATGTCTCCAAACAATACTTCCCTGATGTAGCTGTTGGGTATGATGATCCTCGTGTGACACTTCATATTGGTGATGGAGTTGCATTTCTGAAGGAAGTTCCTGAAGGAACTTATGATGCTGTTATAGTGGATTCATCCGATCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTCTTTTCGTCAGTTGCAAAGGCTCTTCGTCCAGGTGGAGTTGTGTGCACTCAGGCAGAAAGCATATGGCTTCATATGGATATAATTGAGGACATTGTGGCTAATTGTCGCCAGATTTTTAAAGGCTCTGTCAACTATGCTTGGACTACTGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCACCTGTTGATTTCAAGCATCCAGTGAATCCCATAGATGAAAATGAGAGTCAGAAGTCAGTAAGACCGCTGAAATTTTACAACTCTGAGATTCATACCGCAGCTTTCTGCTTGCCGTCGTTTGCGAAGAGGAAGATTGGTTCTAAAGCAAATTAA

Predicted protein sequences of Glyma18g18880

Limit To All Plant Sequences

>Glyma18g18880.1   sequence type=predicted peptide   gene model=Glyma18g18880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADESVVESPVKRQRDDDEENEVSVSMDVEGGKDPLSNGLSSVIPGWFSEISSMWPGEAHSLKVEKILFQGKSEYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVIREVAHHSSVEKIDICEIDKMVVDVSKQYFPDVAVGYDDPRVTLHIGDGVAFLKEVPEGTYDAVIVDSSDPIGPAQELFEKPFFSSVAKALRPGGVVCTQAESIWLHMDIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDENESQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSKAN*

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