SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g18491

Feature Type:gene_model
Chromosome:Gm18
Start:19900922
stop:19917229
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g18491
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23900AT Annotation by Michelle Graham. TAIR10: gamma-adaptin 1 | chr1:8441379-8447152 FORWARD LENGTH=876 SoyBaseE_val: 1.00E-43ISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0030117GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane coat SoyBaseN/AISS
GO:0030121GO-cc Annotation by Michelle Graham. GO Cellular Compartment: AP-1 adaptor complex SoyBaseN/AISS
GO:0030131GO-cc Annotation by Michelle Graham. GO Cellular Compartment: clathrin adaptor complex SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
GO:0030276GO-mf Annotation by Michelle Graham. GO Molecular Function: clathrin binding SoyBaseN/AISS
PTHR22780Panther ADAPTIN, ALPHA/GAMMA/EPSILON JGI ISS
PTHR22780:SF5Panther ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA SUBUNIT (GAMMA-ADAPTIN) JGI ISS
PF01602PFAM Adaptin N terminal region JGI ISS
UniRef100_G5DWC2UniRef Annotation by Michelle Graham. Most informative UniRef hit: AP-1 complex subunit gamma-1 (Fragment) n=1 Tax=Silene latifolia RepID=G5DWC2_SILLA SoyBaseE_val: 6.00E-43ISS
UniRef100_I1KXI7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXI7_SOYBN SoyBaseE_val: 2.00E-46ISS

Expression Patterns of Glyma18g18491
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g18491 not represented in the dataset
Glyma18g18491 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g18491
ParalogEvidenceComments
Glyma08g39930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g18491 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g135400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g18491
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g18491
>Glyma18g18491.1   sequence type=CDS   gene model=Glyma18g18491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGGGTTACACTAACACCAACTCCATTTCCAAGCACCGCGATTTATTTTATTTTATTTTCCTCTTTTTCATTTCGTTTTCCGAAAAAAACTCAGACAGCATAGAAGCGAAGCAAAACAAATCAAAACAACTTTCGCATAACGCATTGCATTGCGATTGTTGCAATTGGAAGAAGGAAAAAGAAAAATTTCAGAGACTCACACAACAGACGCCACTGTCAGATCCAAATCGGTTTCCACTCTCAGATCCGAATTCAGTCAAACTGGATCCGCTTGAGTTTCCAAACATGAACCCCTTCTCTTCTCCCTCGCGTTTGAGGGACATGATTCAGGCCATACGTGCTTGCAAAACTGCAGCAGAAGAACGTGCTGTTGTAAGAAAAGAATGTGCTACCATTCACGCTGCAATAGATGAAAATGATCCAGACTATAGGCACTGGAATCTGGCTAAGCTAATGTTCATCCACATGCTTGGCTACCCCACTCATTTTGGTCAAATGGAGTGCCTCAAGTTGATAGCATCTCCTGGATTTCCATAG
Predicted protein sequences of Glyma18g18491
>Glyma18g18491.1   sequence type=predicted peptide   gene model=Glyma18g18491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAGYTNTNSISKHRDLFYFIFLFFISFSEKNSDSIEAKQNKSKQLSHNALHCDCCNWKKEKEKFQRLTQQTPLSDPNRFPLSDPNSVKLDPLEFPNMNPFSSPSRLRDMIQAIRACKTAAEERAVVRKECATIHAAIDENDPDYRHWNLAKLMFIHMLGYPTHFGQMECLKLIASPGFP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo