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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16790 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:7284093-7284901 REVERSE LENGTH=189 | SoyBase | E_val: 1.00E-65 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004765 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: shikimate kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| KOG3354 | KOG | Gluconate kinase | JGI | ISS | |
| PTHR24220 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24220:SF77 | Panther | SHIKIMATE KINASE FAMILY PROTEIN | JGI | ISS | |
| PF01202 | PFAM | Shikimate kinase | JGI | ISS | |
| UniRef100_G7LG50 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Thermosensitive gluconokinase n=1 Tax=Medicago truncatula RepID=G7LG50_MEDTR | SoyBase | E_val: 2.00E-97 | ISS |
| UniRef100_UPI000233E991 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E991 related cluster n=1 Tax=unknown RepID=UPI000233E991 | SoyBase | E_val: 9.00E-153 | ISS |
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Glyma18g18210 not represented in the dataset |
Glyma18g18210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g40000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g134600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g18210.2 sequence type=transcript gene model=Glyma18g18210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAACGATTCACTATTTCTCTTCCTCAATGTTTTGCTTCATTTTTTGTGTATCAATTAAATTCATATCTGAAACCGAAAACATCACAGGTGTAGTTATCGTGGTCATGGGTGTCAGCGGTGCTGGAAAAACCACAATAGGTCGGAAGCTGGAAAAAGAGTCGAAATATAAGTATCTTGATGCTGATGATTTTCACTCAGAATCAAACAAAGAAAAGATGCGTATGGGAATCCCACTTACAGATGAAGATCGGATGCCATGGTTTGAATCGCTACGCGATGCCATAAAAGAATACTTAAATAACAAAAAGGGTCTGATTCTTGGCTGTTCTGCTTTGAAGAAGGAATATAGAGAAATTCTTAGATCAGGTGACCTTAGTTATAAATGGGGGACTTATGCAAGTGCTGTCAACTTCATTCTGTTGGATGCTCCTGCTGAAGTGCTGAGTGTTCGAGTAAATAAGAGAGCTGCAGAAGGAAAACATTATATGCCTGCATCTCTTCTGCAATCACAGTTAGATTTGCTTGAGATTGATGAGTCTGAGGGAGTACTTAGAGTTGACGCTACTTTGAGACCCCAAGCCATTGTAAACACCATTCTAAACATGAACCAGTTTCAGGGATGTTTCAATGTTGATTTTGTGGAGCCTCATTGATAAATTGGGATCATTATTTCAGGTTTCAAATATAGTTTGTACAAATAAATGGAAGAATGGGATTATGCATGAAAGAAAGGTTGAAGGGAATGGTTCAGAGTATGATAACCAATAGTAAAAAAGGAGCAAGCTGTAAATATGAATTTTTAACATTCCCTGGATTGATTCATGCCATTCTATTTCTTTTTCACCATATGATGTATATATAGAAAATTGCATGTCTCAATAGACCATTGTTTTGTAACTGAATTTTTTCTTATTATCATTTAATTAAACTTTAATGATGTGGCGATTGAACACGTATCGAGTTGGAACATATCATGTATTGTCCAATCTAAAGCACCAAATAATTTGAGTT >Glyma18g18210.3 sequence type=transcript gene model=Glyma18g18210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACATACATATATATATATATATATATATATATATATATTGAAAAAGGATGATCCTTGTTAAATATGGCTTATGCAAGTCATTGCTTGATATGTGGGACATTTAATCAATTTCAAGCTGTTGAACGACACTGCTTGGTTAAGATTTTTTGTTGTAAAACTTATCTAATGGATATTTATTCAACAGCACAATAGGTCGGAAGCTGGAAAAAGAGTCGAAATATAAGTATCTTGATGCTGATGATTTTCACTCAGAATCAAACAAAGAAAAGATGCGTATGGGAATCCCACTTACAGATGAAGATCGGATGCCATGGTTTGAATCGCTACGCGATGCCATAAAAGAATACTTAAATAACAAAAAGGGTCTGATTCTTGGCTGTTCTGCTTTGAAGAAGGAATATAGAGAAATTCTTAGATCAGGTGACCTTAGTTATAAATGGGGGACTTATGCAAGTGCTGTCAACTTCATTCTGTTGGATGCTCCTGCTGAAGTGCTGAGTGTTCGAGTAAATAAGAGAGCTGCAGAAGGAAAACATTATATGCCTGCATCTCTTCTGCAATCACAGTTAGATTTGCTTGAGATTGATGAGTCTGAGGGAGTACTTAGAGTTGACGCTACTTTGAGACCCCAAGCCATTGTAAACACCATTCTAAACATGAACCAGTTTCAGGGATGTTTCAATGTTGATTTTGTGGAGCCTCATTGATAAATTGGGATCATTATTTCAGGTTTCAAATATAGTTTGTACAAATAAATGGAAGAATGGGATTATGCATGAAAGAAAGGTTGAAGGGAATGGTTCAGAGTATGATAACCAATAGTAAAAAAGGAGCAAGCTGTAAATATGAATTTTTAACATTCCCTGGATTGATTCATGCCATTCTATTTCTTTTTCACCATATGATGTATATATAGAAAATTGCATGTCTCAATAGACCATTGTTTTGTAACTGAATTTTTTCTTATTATCATTTAATTAAACTTTAATGATGTGGCGATTGAACACGTATCGAGTTGGAACATATCATGTATTGTCCAATCTAAAGCACCAAATAATTTGAGTT
>Glyma18g18210.1 sequence type=CDS gene model=Glyma18g18210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTTCAAACGATGGTGTAGTTATCGTGGTCATGGGTGTCAGCGGTGCTGGAAAAACCACAATAGGTCGGAAGCTGGAAAAAGAGTCGAAATATAAGTATCTTGATGCTGATGATTTTCACTCAGAATCAAACAAAGAAAAGATGCGTATGGGAATCCCACTTACAGATGAAGATCGGATGCCATGGTTTGAATCGCTACGCGATGCCATAAAAGAATACTTAAATAACAAAAAGGGTCTGATTCTTGGCTGTTCTGCTTTGAAGAAGGAATATAGAGAAATTCTTAGATCAGGTGACCTTAGTTATAAATGGGGGACTTATGCAAGTGCTGTCAACTTCATTCTGTTGGATGCTCCTGCTGAAGTGCTGAGTGTTCGAGTAAATAAGAGAGCTGCAGAAGGAAAACATTATATGCCTGCATCTCTTCTGCAATCACAGTTAGATTTGCTTGAGATTGATGAGTCTGAGGGAGTACTTAGAGTTGACGCTACTTTGAGACCCCAAGCCATTGTAAACACCATTCTAAACATGAACCAGTTTCAGGGATGTTTCAATGTTGATTTTGTGGAGCCTCATTGA >Glyma18g18210.2 sequence type=CDS gene model=Glyma18g18210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTGCTTCATTTTTTGTGTATCAATTAAATTCATATCTGAAACCGAAAACATCACAGGTGTAGTTATCGTGGTCATGGGTGTCAGCGGTGCTGGAAAAACCACAATAGGTCGGAAGCTGGAAAAAGAGTCGAAATATAAGTATCTTGATGCTGATGATTTTCACTCAGAATCAAACAAAGAAAAGATGCGTATGGGAATCCCACTTACAGATGAAGATCGGATGCCATGGTTTGAATCGCTACGCGATGCCATAAAAGAATACTTAAATAACAAAAAGGGTCTGATTCTTGGCTGTTCTGCTTTGAAGAAGGAATATAGAGAAATTCTTAGATCAGGTGACCTTAGTTATAAATGGGGGACTTATGCAAGTGCTGTCAACTTCATTCTGTTGGATGCTCCTGCTGAAGTGCTGAGTGTTCGAGTAAATAAGAGAGCTGCAGAAGGAAAACATTATATGCCTGCATCTCTTCTGCAATCACAGTTAGATTTGCTTGAGATTGATGAGTCTGAGGGAGTACTTAGAGTTGACGCTACTTTGAGACCCCAAGCCATTGTAAACACCATTCTAAACATGAACCAGTTTCAGGGATGTTTCAATGTTGATTTTGTGGAGCCTCATTGA >Glyma18g18210.3 sequence type=CDS gene model=Glyma18g18210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTATGGGAATCCCACTTACAGATGAAGATCGGATGCCATGGTTTGAATCGCTACGCGATGCCATAAAAGAATACTTAAATAACAAAAAGGGTCTGATTCTTGGCTGTTCTGCTTTGAAGAAGGAATATAGAGAAATTCTTAGATCAGGTGACCTTAGTTATAAATGGGGGACTTATGCAAGTGCTGTCAACTTCATTCTGTTGGATGCTCCTGCTGAAGTGCTGAGTGTTCGAGTAAATAAGAGAGCTGCAGAAGGAAAACATTATATGCCTGCATCTCTTCTGCAATCACAGTTAGATTTGCTTGAGATTGATGAGTCTGAGGGAGTACTTAGAGTTGACGCTACTTTGAGACCCCAAGCCATTGTAAACACCATTCTAAACATGAACCAGTTTCAGGGATGTTTCAATGTTGATTTTGTGGAGCCTCATTGA
>Glyma18g18210.1 sequence type=predicted peptide gene model=Glyma18g18210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSNDGVVIVVMGVSGAGKTTIGRKLEKESKYKYLDADDFHSESNKEKMRMGIPLTDEDRMPWFESLRDAIKEYLNNKKGLILGCSALKKEYREILRSGDLSYKWGTYASAVNFILLDAPAEVLSVRVNKRAAEGKHYMPASLLQSQLDLLEIDESEGVLRVDATLRPQAIVNTILNMNQFQGCFNVDFVEPH* >Glyma18g18210.2 sequence type=predicted peptide gene model=Glyma18g18210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFCFIFCVSIKFISETENITGVVIVVMGVSGAGKTTIGRKLEKESKYKYLDADDFHSESNKEKMRMGIPLTDEDRMPWFESLRDAIKEYLNNKKGLILGCSALKKEYREILRSGDLSYKWGTYASAVNFILLDAPAEVLSVRVNKRAAEGKHYMPASLLQSQLDLLEIDESEGVLRVDATLRPQAIVNTILNMNQFQGCFNVDFVEPH* >Glyma18g18210.3 sequence type=predicted peptide gene model=Glyma18g18210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRMGIPLTDEDRMPWFESLRDAIKEYLNNKKGLILGCSALKKEYREILRSGDLSYKWGTYASAVNFILLDAPAEVLSVRVNKRAAEGKHYMPASLLQSQLDLLEIDESEGVLRVDATLRPQAIVNTILNMNQFQGCFNVDFVEPH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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