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Report for Sequence Feature Glyma18g18050

Feature Type:gene_model
Chromosome:Gm18
Start:19282267
stop:19284582
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g18050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11400AT Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 3G1 | chr3:3578536-3580366 FORWARD LENGTH=294 SoyBaseE_val: 1.00E-154ISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0006413GO-bp Annotation by Michelle Graham. GO Biological Process: translational initiation SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005852GO-cc Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 3 complex SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003743GO-mf Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG0122 KOG Translation initiation factor 3, subunit g (eIF-3g) JGI ISS
PTHR10352Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
PF12353PFAM Eukaryotic translation initiation factor 3 subunit G JGI ISS
UniRef100_I1N1D5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Glycine max RepID=I1N1D5_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1N1D5UniRef Annotation by Michelle Graham. Best UniRef hit: Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Glycine max RepID=I1N1D5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g18050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g18050
ParalogEvidenceComments
Glyma08g40110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g18050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g133400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g18050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g18050
>Glyma18g18050.1   sequence type=CDS   gene model=Glyma18g18050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCATCAAGGAGAACCGGCGAAGCTGCGGTGGGGTGAGCTCGAGGAGGACGACGGCGAGGATCTGGACTTCCTCCTGCCGCCGCGGCAGGTGATAGGCCCCGACGAGAACGGGATAAAGAAGGTGATCGAGTACAAGTTCGACGAGGACGGGAACAAGGTGAAGATCACCACCACCACGCGCACGCGCAAGCTCGCCAACGCGCGTCTCAGCAAACGCGCCGTCGAGCGCCGCTCCTGGCCCAAGTTCGGCGACGCCGTCCACGAAGACGTTGGTGCCCGCCTCACCATGGTCTCCACCGAAGAGATCCTACTCGAACGCCCCAAGCCTCTTGGTGCCAAGTCAGAGGAGCCAAAGAATGCTGGAGACCCATTGGCTCAATTTCAGAAAGGTGCTGTTCTTATGGTCTGTAGGACTTGTGGGAAGAAGGGTGATCACTGGACCTCAAGGTGTCCATACAAGGATCTTGCCCCGCCATCTGAGGGATTCGTCGATAAACCTGCGGCGGCAGACACTGTGGCAGCCACTGCTGGTGCAACCAAGGGAGCATATGTGCCTCCTGGTATGAGGGCAGGTGCTGAGAGGACTACTGGATCTGATATGCGGCGCAGGAATGATGAGAATTCTGTGAGGGTAACTAACCTCTCTGAGGACACGAGAGAGCCTGATTTGCTGGAGCTGTTCCGTCCTTTCGGTCCTGTCAGCAGAGTCTATGTTGCCATTGATCAGAAGACTGGCATGAGCAGAGGGTTTGGCTTTGTTAACTTTGTCAACAGGGAAGATGCACAAAGAGCTATTAACAAACTCAATGGGTATGGCTATGACAATCTCATCCTTAGAGTTGAATGGGCAACCCCAAGGGCAAATTAA
Predicted protein sequences of Glyma18g18050
>Glyma18g18050.1   sequence type=predicted peptide   gene model=Glyma18g18050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHQGEPAKLRWGELEEDDGEDLDFLLPPRQVIGPDENGIKKVIEYKFDEDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGARLTMVSTEEILLERPKPLGAKSEEPKNAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPAAADTVAATAGATKGAYVPPGMRAGAERTTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGPVSRVYVAIDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAN*






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