SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g17705

Feature Type:gene_model
Chromosome:Gm18
Start:18923266
stop:18931424
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g17705
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G24090AT Annotation by Michelle Graham. TAIR10: RNase H family protein | chr1:8520834-8522737 FORWARD LENGTH=353 SoyBaseE_val: 8.00E-109ISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004523GO-mf Annotation by Michelle Graham. GO Molecular Function: ribonuclease H activity SoyBaseN/AISS
PF00075PFAM RNase H JGI ISS
UniRef100_B9T8F6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nuclease, putative n=1 Tax=Ricinus communis RepID=B9T8F6_RICCO SoyBaseE_val: 7.00E-131ISS
UniRef100_UPI000233E988UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E988 related cluster n=1 Tax=unknown RepID=UPI000233E988 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g17705
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g17705 not represented in the dataset
Glyma18g17705 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g17705
ParalogEvidenceComments
Glyma08g40181 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g17705 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g133000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g17705
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g17705
>Glyma18g17705.2   sequence type=transcript   gene model=Glyma18g17705   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAACCCGACCCGTATAACGTTGGATAGCAAAACGCCAAACCGCTCTTTGCCCAACACCCCACACTCTCTCTCTCTCGTCTTCCTTCGTCTTCCACTCTCACACAACTCCCAACTTCCAATTCACAAAACCGTCACTATTTACCAACCCACTTCACTTCCCCCACTCAACAACAGTCGATTCCATTCCACAATGCATTTTCCCCCACTTTCCCAGCAACCAAACAGCACATAATTCCTTCCAACTCGAGCCTCTTTCTCTGTCATGTACCGCTTGTCGCAGCTTTCATCGTACACCGCCTCTATAGTCGGAAGCACCGTTCGACTCATCGCGAACCGCTCCCTGCACCACCAGTGCTGCTCGTTACCGGCGAAACCAGAGTATCGCGGAATTAGGTCTTTCCGTTCAGAATTCGCGGTGACCACTCGGTGCTACTCCGCCAAAAAAGGACGCAAGAGCAAGGTGGAGCCTGAAGCGATGAAGCAGGAGAAGGACGCTTTCTACGTCGTTCGGAAAGGGGACGTTGTTGGAATCTATAACAGTCTGGCTGATTCTCAGGCTCAAGTTGGATCTTCCGTATGCAATCCTCCTGTTAGTGTGTTCAAGGGATACTCGTTGTCAAAGGACACTGAGGAGTATCTTGTCTCGCATGGACTGAAGAATGCTTTATACACAATTAGGGCCACTGATTTGAAAGAGGATTTGTTTGGCATGCTTGTTCCTTGCCCTTTACAGGAACCTTCTACCAAAGAGAGCACATCAAATAAGGATGTATCTAAGAAGAGATCTTTGGGAGTGCTTGGACAAGATGAGAAAGTAATATCTGAAGATCCCTTGAGAAAGCAAGTCAAGTTAGATCATGCTGCTGTGGCTGAAGCACCTTTACATGCAACTACTTGTTTTGTTGAGTTTGATGGTGCGTCAAAAGGAAATCCTGGAAAAGCTGGTGCTGGGGCTATTCTACGAGCTAATGATGGAAGTTTGATTTGTAGATTGCGTGAAGGTGTGGGTATAGCAACAAACAATGCTGCTGAATATCGTGCAATGATATTGGGAATGAAATATGCTCTTAAAAAGGGATTTACTGGTATTCGTATCCAAGGTGATTCCAAACTTGTTTGCATGCAGATTGATGGTTCCTGGAAGGTCAAGAATGAAAACTTGTCTACATTGTATAATGTGGCAAAAGAACTCAAGGATAAATTTTCCTCATTCCAGATCAGTCATGTTCTAAGGAACTTCAACTCTGACGCTGATGCTCAAGCAAATTTGGCCATAAATCTTGCAGATGGCCAAGTTCAAGAAGAGTGTGTGTAATTCACTCATGGCAGCTGATGATTATGTTTTGGGTTTGTTGCAGAACACGTCTGCAATTTACAGATTAGTCCTAAGAATTGGCGACCCAGTTATTTAGAACTCAAACCCTAAGAATGAATTATTTTGAATTAGTTCTCTTCTGGTCCTGACTCAACTTTTAACCGCAGCATTTTCAATTTCCATAAATTTTTTCCGCATGAAGGATTCCCATTAGGACTTATCAACACTGCAATCACATAAAGTTAGAGTTTGTCATTTTCATTCTTGAGCATATGGAAGACCAGAATATCTTACAGTCTACAGCAAACATGATTCTTGTTCAATAACACTAATATTATCATACGTCTTAGTTGAAAGTGCTGTTTCATTAACTTTTTGTATCTATTCGGATTCTTTCTACTGGGTTTTAATACAGTTACATTTCCAAGACTCAAGCTCAGACCAAGTTAGAATAGCCCCCTGCCAACTGATTTACATTTATTTTTTTGTTACAACTGATTTACATGCTCAGTGGTGTTTCATTAATTGTAATACTAATATTTTATAATTAATATTGTTATCTGCATACAACTCTTGAATGTGGAATCAATTTGTTGGGAGTTAT
Coding sequences of Glyma18g17705
>Glyma18g17705.1   sequence type=CDS   gene model=Glyma18g17705   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACCGCTTGTCGCAGCTTTCATCGTACACCGCCTCTATAGTCGGAAGCACCGTTCGACTCATCGCGAACCGCTCCCTGCACCACCAGTGCTGCTCGTTACCGGCGAAACCAGAGTATCGCGGAATTAGGTCTTTCCGTTCAGAATTCGCGGTGACCACTCGGTGCTACTCCGCCAAAAAAGGACGCAAGAGCAAGGTGGAGCCTGAAGCGATGAAGCAGGAGAAGGACGCTTTCTACGTCGTTCGGAAAGGGGACGTTGTTGGAATCTATAACAGTCTGGCTGATTCTCAGGCTCAAGTTGGATCTTCCGTATGCAATCCTCCTGTTAGTGTGTTCAAGGGATACTCGTTGTCAAAGGACACTGAGGAGTATCTTGTCTCGCATGGACTGAAGAATGCTTTATACACAATTAGGGCCACTGATTTGAAAGAGGATTTGTTTGGCATGCTTGTTCCTTGCCCTTTACAGGAACCTTCTACCAAAGAGAGCACATCAAATAAGGATGTATCTAAGAAGAGATCTTTGGGAGTGCTTGGACAAGATGAGAAAGTAATATCTGAAGATCCCTTGAGAAAGCAAGTCAAGTTAGATCATGCTGCTGTGGCTGAAGCACCTTTACATGCAACTCAGACTTGTTTTGTTGAGTTTGATGGTGCGTCAAAAGGAAATCCTGGAAAAGCTGGTGCTGGGGCTATTCTACGAGCTAATGATGGAAGTTTGATTTGTAGATTGCGTGAAGGTGTGGGTATAGCAACAAACAATGCTGCTGAATATCGTGCAATGATATTGGGAATGAAATATGCTCTTAAAAAGGGATTTACTGGTATTCGTATCCAAGGTGATTCCAAACTTGTTTGCATGCAGATTGATGGTTCCTGGAAGGTCAAGAATGAAAACTTGTCTACATTGTATAATGTGGCAAAAGAACTCAAGGATAAATTTTCCTCATTCCAGATCAGTCATGTTCTAAGGAACTTCAACTCTGACGCTGATGCTCAAGCAAATTTGGCCATAAATCTTGCAGATGGCCAAGTTCAAGAAGAGTGTGTGTAA

>Glyma18g17705.2   sequence type=CDS   gene model=Glyma18g17705   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACCGCTTGTCGCAGCTTTCATCGTACACCGCCTCTATAGTCGGAAGCACCGTTCGACTCATCGCGAACCGCTCCCTGCACCACCAGTGCTGCTCGTTACCGGCGAAACCAGAGTATCGCGGAATTAGGTCTTTCCGTTCAGAATTCGCGGTGACCACTCGGTGCTACTCCGCCAAAAAAGGACGCAAGAGCAAGGTGGAGCCTGAAGCGATGAAGCAGGAGAAGGACGCTTTCTACGTCGTTCGGAAAGGGGACGTTGTTGGAATCTATAACAGTCTGGCTGATTCTCAGGCTCAAGTTGGATCTTCCGTATGCAATCCTCCTGTTAGTGTGTTCAAGGGATACTCGTTGTCAAAGGACACTGAGGAGTATCTTGTCTCGCATGGACTGAAGAATGCTTTATACACAATTAGGGCCACTGATTTGAAAGAGGATTTGTTTGGCATGCTTGTTCCTTGCCCTTTACAGGAACCTTCTACCAAAGAGAGCACATCAAATAAGGATGTATCTAAGAAGAGATCTTTGGGAGTGCTTGGACAAGATGAGAAAGTAATATCTGAAGATCCCTTGAGAAAGCAAGTCAAGTTAGATCATGCTGCTGTGGCTGAAGCACCTTTACATGCAACTACTTGTTTTGTTGAGTTTGATGGTGCGTCAAAAGGAAATCCTGGAAAAGCTGGTGCTGGGGCTATTCTACGAGCTAATGATGGAAGTTTGATTTGTAGATTGCGTGAAGGTGTGGGTATAGCAACAAACAATGCTGCTGAATATCGTGCAATGATATTGGGAATGAAATATGCTCTTAAAAAGGGATTTACTGGTATTCGTATCCAAGGTGATTCCAAACTTGTTTGCATGCAGATTGATGGTTCCTGGAAGGTCAAGAATGAAAACTTGTCTACATTGTATAATGTGGCAAAAGAACTCAAGGATAAATTTTCCTCATTCCAGATCAGTCATGTTCTAAGGAACTTCAACTCTGACGCTGATGCTCAAGCAAATTTGGCCATAAATCTTGCAGATGGCCAAGTTCAAGAAGAGTGTGTGTAA
Predicted protein sequences of Glyma18g17705
>Glyma18g17705.1   sequence type=predicted peptide   gene model=Glyma18g17705   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRLSQLSSYTASIVGSTVRLIANRSLHHQCCSLPAKPEYRGIRSFRSEFAVTTRCYSAKKGRKSKVEPEAMKQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVSVFKGYSLSKDTEEYLVSHGLKNALYTIRATDLKEDLFGMLVPCPLQEPSTKESTSNKDVSKKRSLGVLGQDEKVISEDPLRKQVKLDHAAVAEAPLHATQTCFVEFDGASKGNPGKAGAGAILRANDGSLICRLREGVGIATNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKELKDKFSSFQISHVLRNFNSDADAQANLAINLADGQVQEECV*

>Glyma18g17705.2   sequence type=predicted peptide   gene model=Glyma18g17705   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRLSQLSSYTASIVGSTVRLIANRSLHHQCCSLPAKPEYRGIRSFRSEFAVTTRCYSAKKGRKSKVEPEAMKQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVSVFKGYSLSKDTEEYLVSHGLKNALYTIRATDLKEDLFGMLVPCPLQEPSTKESTSNKDVSKKRSLGVLGQDEKVISEDPLRKQVKLDHAAVAEAPLHATTCFVEFDGASKGNPGKAGAGAILRANDGSLICRLREGVGIATNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKELKDKFSSFQISHVLRNFNSDADAQANLAINLADGQVQEECV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo