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Report for Sequence Feature Glyma18g17590

Feature Type:gene_model
Chromosome:Gm18
Start:18905941
stop:18908415
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g17590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14342AT Annotation by Michelle Graham. TAIR10: Splicing factor 3B subunit 5/RDS3 complex subunit 10 | chr4:8253789-8255405 REVERSE LENGTH=87 SoyBaseE_val: 6.00E-58ISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3485 KOG Uncharacterized conserved protein JGI ISS
PTHR20978Panther FAMILY NOT NAMED JGI ISS
PF07189PFAM Splicing factor 3B subunit 10 (SF3b10) JGI ISS
UniRef100_E5GC24UniRef Annotation by Michelle Graham. Most informative UniRef hit: Splicing factor 3b subunit n=1 Tax=Cucumis melo subsp. melo RepID=E5GC24_CUCME SoyBaseE_val: 7.00E-56ISS
UniRef100_I1KXK6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXK6_SOYBN SoyBaseE_val: 8.00E-59ISS

Expression Patterns of Glyma18g17590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g17590 not represented in the dataset
Glyma18g17590 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g17590
ParalogEvidenceComments
Glyma08g40200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g17590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g132700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g17590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g17590
>Glyma18g17590.1   sequence type=CDS   gene model=Glyma18g17590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCTAGTGATAGGTTTAACATCAATTCTCAGCTCGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATTTGAGTGGGCAGTGAACATTCAACGTGATAGCTATGCATCATATATTGGGCACTACCCTTTACTGGGATTCTTTGCTATTGCTGAAAATGAATCTATTGGAAGAGAACGCTACAGCTTTATGCAGAAAATGCTCCTGCCTTGTGGTTTGCCTCCCGAAAGAGAAGAAGATTAA
Predicted protein sequences of Glyma18g17590
>Glyma18g17590.1   sequence type=predicted peptide   gene model=Glyma18g17590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPLLGFFAIAENESIGRERYSFMQKMLLPCGLPPEREED*






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