Glyma18g17290 - SoyBase

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Report for Sequence Feature Glyma18g17290

Feature Type:	gene_model
Chromosome:	Gm18
Start:	18444430
stop:	18447618
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g17290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70140	AT	Annotation by Michelle Graham. TAIR10: formin 8 \| chr1:26412688-26415048 REVERSE LENGTH=760	SoyBase	E_val: 0	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0016043	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular component organization	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0030036	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005911	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell-cell junction	SoyBase	N/A	ISS
GO:0003779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin binding	SoyBase	N/A	ISS
GO:0005522	GO-mf	Annotation by Michelle Graham. GO Molecular Function: profilin binding	SoyBase	N/A	ISS
GO:0051015	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin filament binding	SoyBase	N/A	ISS
KOG1922	KOG	Rho GTPase effector BNI1 and related formins	JGI		ISS
PTHR23213	Panther	FORMIN-RELATED	JGI		ISS
PTHR23213:SF18	Panther	FORMIN-RELATED	JGI		ISS
PF02181	PFAM	Formin Homology 2 Domain	JGI		ISS
UniRef100_G7LER2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Formin-like protein n=1 Tax=Medicago truncatula RepID=G7LER2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N1C1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N1C1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g17290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g17290

Paralog	Evidence	Comments
Glyma08g40360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g17290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g130800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g17290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g17290

Limit To All Plant Sequences

>Glyma18g17290.1   sequence type=CDS   gene model=Glyma18g17290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCTTCAATCATGGCCTTTTATGAGCCTTGTTTTTGTTTTACTTTTGCACAGTTTGTCAATAACACCATATTGTCATTGCCAAACCAGCAATTCTCCTCCTCAAAACATTGAAACTTTCTATCCAAATGGAACTTCAGCAACACAACAACCTTTGCCGCCACCACCACAGCCACAACAACCACCGCCACTTCCAACCGCTAACGTAGCACCTAGCCACGGTTCATTGAACCATAACATAGCGACCGCGGTGGCTGCAACTGCGGCCAGCACCATAGTTGTTTGTGGTTTAATTTTCTTTTTGGTTCAAAGGTGCTTGAGGAAGAGAAGGAGAAGGAGAGAGGAGACAAGAAGTAACACTGCAACTGCTGATGGAGATACCCGAGTTGTGCCTCAGGGAAATGTGTTTGAGAGAATTGATGGGAATGTGAGGGGGTTGATCGTTGATGAGGATGGTTTGGATGTGATTTATTGGAGAAAGCTTGAAGGGAAGAACTCTAACAAGGATCTTCTACATAAGGAGGTTGTGAGTAGTCCTAGAAACAAAGAAAAAGCAGAACATGGTCATGATGAAAATCAAGTGAAGAAATCCAAGTCCATCCAAGTGGTTCCTCTGCTTAGAGGAAAATCTTCAACTTCTCACTTGAATGTATCTCCAGAAGAGGATGAGCCATATAGATTTTCGCCGCTTCCATCTCCTACTCCTTCAAGTCTTCCTGCATCAGCTGGGATTGTTATCAAGGATGTTCAGAAACCAGATTCTCCAACTCAACCATCAACTCCACCCCCTCCAATTTCACCCTCAACTCCATCATCCTCTGCTTCTTTTGCAGCAATTCCGAAAAGGAATACTCCTGCACCGTCGCCTCCCCCTCTCCCAATCTCAGTTAGAAGGAGTCCAGCACCACCTCCTCCTCCTCCAGCATCATCAAAACCACCACCTGCTCCAATTGAAATGACAGCTATTAAGCAAAGAAACTCTTCAGGGAAAGGCATGCCAGAAACCAGCAATGATCAAGTGAAGCTGAAGCCTTTGCATTGGGATAAGGTGAATAGTAATAATGCTGATCACTCCATAGTTTGGGACAAAGTCGATCGTGGCTCTTTCAGGGTTGATCAAGATCTTATGGAAGCTCTCTTTGGTTATGTCGCAACCAACCGAAGATCTCCCAAAGGAAAGAGTCACTCAGCCATTCCCAGCAAGGATGGCTCAGCTTCTTCAGCAAAAACATTTCTTCTTGACCCTAGAAAATCACAGAACATTGCTATTGTTTTGAAATCTCTTGCAGTCTCACAAGGCGAAATTCTTGATACACTCATTGATGGTAAGGGCCTCAATGCAGATACCCTTGAAAAGCTTGCTAGAGTTTCCCCAACAGAAGAAGAGCAATCTCTTATCCTTCAATACAAAGGAGACCCAGCAAGACTTCCAGCAGCTGAATCATTCCTCTATAGCATCCTTAAAGCTGTTCCCTCGGCTTTCAAGCGCTTGAATGCCATGCTATTCAGGTTGAACTATGACTCAGAGATTCAAGAAATCAAGGAATCTCTGCAGACCATTGAACTGGGGTGTAACGAGCTTAAAAGCAAAGGACTCTTTGTGAAGCTTCTTGAAGCAGTGCTTAAGGCAGGAAATCGAATGAATGCAGGAACTGCAAGAGGTAATGCTCAAGCTTTTTTCAATTTGGCTTCTCTAAGGAAGCTCTCTGATGTCAAGACCACCAATGGAAGAACGACATTACTTCACTTTGGGGTTGAAGAGGTAGTCCGTTTGGAGGGAAAACGGGTTTCTCTTAACCGCAATGGCAGCCTGAGCAGTAGCAGCAGTAGGAGCAACAGCAACAGCAATGGAAACTATGAGAACAACATTGCTTCAAATGAACTGATAGAAAGGGAATATGTAACATTAGGATTGCCAATTGTAGGAGGGATCAATTCTGAGTTATCCAATGTTAAGAAAGCAGCACAAATAGATTATAACAATTTAGTTGGTTCAATCTCGGCCCTCTCAACCTGGTTAGTTGAAATTCGAGAACTTGCTTCCTTGTGTGGAAATGGAGGAAATTTTGTGAAAGAAATGGATCATTTTCTGGGAAATGCAGAGGATGAGTTGAAATTAGTGAGGGACAAGCAAACAAGTGTGTTTCAGCTCATCAAGAAAACAACACAATACTATCAAGGAGGAGCCTCAAAAGAGACTGCAGAAGACAATCTTCAATTGTTTGTCATAGTGAAGGATTTCCTGGGAATGGTTGATCAAACTTGCACTGAGATTGCACGTGAGCATCAGAAGAGGAAACCTCCCAAGGCAATTTTTGGGTAG

Predicted protein sequences of Glyma18g17290

Limit To All Plant Sequences

>Glyma18g17290.1   sequence type=predicted peptide   gene model=Glyma18g17290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLQSWPFMSLVFVLLLHSLSITPYCHCQTSNSPPQNIETFYPNGTSATQQPLPPPPQPQQPPPLPTANVAPSHGSLNHNIATAVAATAASTIVVCGLIFFLVQRCLRKRRRRREETRSNTATADGDTRVVPQGNVFERIDGNVRGLIVDEDGLDVIYWRKLEGKNSNKDLLHKEVVSSPRNKEKAEHGHDENQVKKSKSIQVVPLLRGKSSTSHLNVSPEEDEPYRFSPLPSPTPSSLPASAGIVIKDVQKPDSPTQPSTPPPPISPSTPSSSASFAAIPKRNTPAPSPPPLPISVRRSPAPPPPPPASSKPPPAPIEMTAIKQRNSSGKGMPETSNDQVKLKPLHWDKVNSNNADHSIVWDKVDRGSFRVDQDLMEALFGYVATNRRSPKGKSHSAIPSKDGSASSAKTFLLDPRKSQNIAIVLKSLAVSQGEILDTLIDGKGLNADTLEKLARVSPTEEEQSLILQYKGDPARLPAAESFLYSILKAVPSAFKRLNAMLFRLNYDSEIQEIKESLQTIELGCNELKSKGLFVKLLEAVLKAGNRMNAGTARGNAQAFFNLASLRKLSDVKTTNGRTTLLHFGVEEVVRLEGKRVSLNRNGSLSSSSSRSNSNSNGNYENNIASNELIEREYVTLGLPIVGGINSELSNVKKAAQIDYNNLVGSISALSTWLVEIRELASLCGNGGNFVKEMDHFLGNAEDELKLVRDKQTSVFQLIKKTTQYYQGGASKETAEDNLQLFVIVKDFLGMVDQTCTEIAREHQKRKPPKAIFG*

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