SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G59820 | AT | Annotation by Michelle Graham. TAIR10: aminophospholipid ATPase 3 | chr1:22011599-22020023 FORWARD LENGTH=1213 | SoyBase | E_val: 0 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0006820 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anion transport | SoyBase | N/A | ISS |
| GO:0006862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0015696 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ammonium transport | SoyBase | N/A | ISS |
| GO:0015802 | GO-bp | Annotation by Michelle Graham. GO Biological Process: basic amino acid transport | SoyBase | N/A | ISS |
| GO:0015914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phospholipid transport | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0043269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of ion transport | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0048194 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle budding | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: shoot development | SoyBase | N/A | ISS |
| GO:0048527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root development | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0004012 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipid-translocating ATPase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0005548 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipid transporter activity | SoyBase | N/A | ISS |
| GO:0015662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG0206 | KOG | P-type ATPase | JGI | ISS | |
| PTHR24092 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24092:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | ISS | |
| UniRef100_G7LDU7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phospholipid-transporting ATPase n=1 Tax=Medicago truncatula RepID=G7LDU7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E167 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E167 related cluster n=1 Tax=unknown RepID=UPI000233E167 | SoyBase | E_val: 0 | ISS |
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Glyma18g16990 not represented in the dataset |
Glyma18g16990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g40530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g129200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g16990.2 sequence type=CDS gene model=Glyma18g16990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAATACAATGAATGTTCCTTCCAAAAGAAGTACATTGGAGAGGAAACTTGACAAGCTCATACTAACTCTATTTGCAACTCTCTTTGTGATGTGTTTCATTGGAGCCGTAGGCAGTGCTATCTTCGTAAACAAAAAATATTTTTACTTACATCTTGATTCATCAGAGGAGGGCTCAGCACAGTTCAACCCCAAAAACAGATTTTTGGTTTTTCTCCTAACTATGTTTACCCTAATCACACTATACTCGACTATCATTCCCATTTCACTTTATGTGTCCATAGAGATGATAAAATTTATTCAGTCAACTCAATTTATCAACAAGGACTTGTGCATGTACCATAATGAAACCAATACACCTGCATTGGCCAGAACTTCAAATCTGAATGAAGAACTTGGGCAGGTGGAATACATTTTCTCTGACAAAACTGGGACTCTGACAAGAAATTTGATGGAGTTCTTTAAGTGTTCAATTGGAGGAGAGGTCTATGGAAATGGTGTGACTGAAATTGAGAGAGGATTAGCAGAGCGTAATGGAATGAAGATTGAGGAAAATAGATCTCCCAATGCAGTGCACGAGAGGGGTTTTAATTTTGATGATGCTAGGATTATGAGAGGAGCTTGGAGGAATGAACCGAATCCTGATGTCTGCAAGGAATTCTTCAGATGCCTTGCTATATGCCATACTGTACTGCCTGAGGGTGATGAGTCCCCTGAAAAGATCAGATATCAAGCTGCATCACCAGATGAGGCTGCTTTGGTTATTGCTGCAAAACACTTTGGTTTCTTTTTCTACAGACGCACACCTACAATGATATATGTTCGTGAATCTCATGTTGAGAAAATGGGCAAAGTTCAAGATGTGTCTTATGAGATTTTAAATGTGCTCGAGTTTAATAGTACAAGGAAGCGTCAGTCTGTTGTTTGTCGTTATCCTGATGGAAGGCTTGTACTATACTGTAAGGGTGCTGATAATGTAGTCTATGAGAGACTAGCTGATGGTAATAATAATATCAAGAAAGTCACCAGGGAGCATTTGGAACAATTTGGATCTGCTGGATTACGCACCTTATGCCTAGCCTACAAAGAATTGCATCCTGATGTTTATGAAAGCTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTAAATGATCGTGAAAAGAAATTGGATGAGGTGGCAGAACTTATTGAAAATGATCTCATTTTAATTGGTAGCACAGCCATTGAAGACAAGCTTCAAGAGGGAGTACCAGCTTGCATAGAGACTCTGCAAAGAGCTGGTATTAAAATTTGGGTTCTTACAGGGGACAAGATTGAAACAGCGATAAACATAGCCTATGCATGCAACTTGATAAACAATGAGATGAAGCAATTTGTTATTAGTTCAGAAACTGATGCAATTAGAGAAGTTGAAGACAGGGGTGACCAAGTGGAAATTGCACGGTTTATTATAGAAGAAGTGAAAAGAGAACTGAAGAAATGCCTCGAGGAAGCACAGAGCTCCTTTCAGTCCCTATCTGGACCAAAATTAGCACTTGTAATTGATGGAAAATGTCTAATGTATGCATTGGATCCAAGTTTGAGAGTGATGCTGCTGAATCTAAGTTTGAATTGTCACGCTGTAGTTTGCTGCCGAGTTTCTCCTTTACAGAAAGCACAGGTCACGAGTATGGTCAAGAAAGGTGCACAAAAAATTACACTTAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGCGTTGGCATAAGTGGGATGGAGGGAATGCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTCCGTTACCTTGCAGATTTGCTTCTTGTTCATGGCCGATGGTCATATTTGCGAATATGCAAGGTTGTGATATACTTCTTTTACAAGAACCTCACCTTCACTCTTACTCAGTTTTGGTTTACATTTCAAACTGGGTTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAGTCATTATATAATGTTATCTTCACAGCACTTCCTGTAATCATTGTTGGATTATTTGACAAGGATGTCAGTTCATCTCTATCCAAGAAATATCCTGAACTATACATGGAAGGAATAAGAAATGTTTTCTTCAAATGGAAAGTTGTGGCCATATGGGCTTTCTTTTCTGTATACCAGTCTCTAATATTCTTCTATTTTGTGAGTACTACAAATTTAAGTGCTAAAAACTCAGCAGGCAAGGTATTTGGACTCTGGGATGTCAGTACAATGGCCTTCACTTGTGTTGTAATAACCGTCAACTTGCGACTGCTTATGATTTGTAATTCGATCACTAGATGGCACTATATTAGTGTTGGTGGAAGTATATTAGCCTGGTTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCAGGAGAATATTTATTTTGTCATATATGTCTTGATGAGTACATTCTACTTCTATGTCATGCTACTTCTAGTTCCTATTGCTGCACTTTTCTGTGACTTTGTTTACCAAGGGGTTCAAAGATGGTTCTTCCCCTATGATTATCAGATTATTCAAGAAATGCATAGAGATGAGGTAGATAGCACTGGTAGAGCACAGCTGCTGGAGATAGGGAACCAGCTTACACCAGCTGAGGCAAGGAGTCATGCTATATCTCAACTCCCACGCGAAATATCAAAGCACACTGGGTTTGCTTTTGATTCACCTGGGTATGAATCCTTTTTTGCCTCACAGCTCGGTGTATATGCTCCACCCAAGGCATGGGATGTAGCAAGAAGAGCTAGCATGAGATCACGGCCAAAGATTGGGCAGCAAAAATAA
>Glyma18g16990.2 sequence type=predicted peptide gene model=Glyma18g16990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMNTMNVPSKRSTLERKLDKLILTLFATLFVMCFIGAVGSAIFVNKKYFYLHLDSSEEGSAQFNPKNRFLVFLLTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLCMYHNETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGNGVTEIERGLAERNGMKIEENRSPNAVHERGFNFDDARIMRGAWRNEPNPDVCKEFFRCLAICHTVLPEGDESPEKIRYQAASPDEAALVIAAKHFGFFFYRRTPTMIYVRESHVEKMGKVQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADNVVYERLADGNNNIKKVTREHLEQFGSAGLRTLCLAYKELHPDVYESWNEKFIQAKSSLNDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFVISSETDAIREVEDRGDQVEIARFIIEEVKRELKKCLEEAQSSFQSLSGPKLALVIDGKCLMYALDPSLRVMLLNLSLNCHAVVCCRVSPLQKAQVTSMVKKGAQKITLSIGDGANDVSMIQAAHVGVGISGMEGMQAVMASDFAIAQFRYLADLLLVHGRWSYLRICKVVIYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSSSLSKKYPELYMEGIRNVFFKWKVVAIWAFFSVYQSLIFFYFVSTTNLSAKNSAGKVFGLWDVSTMAFTCVVITVNLRLLMICNSITRWHYISVGGSILAWFIFIFIYSGISTPYDRQENIYFVIYVLMSTFYFYVMLLLVPIAALFCDFVYQGVQRWFFPYDYQIIQEMHRDEVDSTGRAQLLEIGNQLTPAEARSHAISQLPREISKHTGFAFDSPGYESFFASQLGVYAPPKAWDVARRASMRSRPKIGQQK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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