Glyma18g16870 - SoyBase

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Report for Sequence Feature Glyma18g16870

Feature Type:	gene_model
Chromosome:	Gm18
Start:	17579693
stop:	17583864
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g16870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62620	AT	Annotation by Michelle Graham. TAIR10: Galactosyltransferase family protein \| chr5:25137136-25139764 FORWARD LENGTH=681	SoyBase	E_val: 0	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008378	GO-mf	Annotation by Michelle Graham. GO Molecular Function: galactosyltransferase activity	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
KOG2287	KOG	Galactosyltransferases	JGI		ISS
PTHR11214	Panther	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE	JGI		ISS
PTHR11214:SF11	Panther	BETA 1,3-GALACTOSYLTRANSFERASE-RELATED	JGI		ISS
PF00337	PFAM	Galactoside-binding lectin	JGI		ISS
PF01762	PFAM	Galactosyltransferase	JGI		ISS
UniRef100_B9R916	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Galactosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9R916_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N1A7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1A7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g16870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g16870

Paralog	Evidence	Comments
Glyma08g40570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g16870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g128600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g16870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g16870

Limit To All Plant Sequences

>Glyma18g16870.2   sequence type=transcript   gene model=Glyma18g16870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAGGCTTTTCTCTGGTTCTCTTTTTGCATTTATGTGATTAAAATTTGGGTGTGCACAAGCTGGCCCCTGTTGATTCTTTTCCACTTTACGGCTAAGCTTCCAAAGGCCATAGCCATTGTTGATGCATTGAACGTTACTCAAAAACGAAAAAAAAAAAAATTCCCATTGCTTCTGATTCTTCTGGGAGGGTTTAGAAATCACCAATCACCTCATTCTATTCAACTTGATACAAAAAAACTTGTGATTTTTTAGAACAATGAAGAGGGTGAAGAAGCTATACCCATTTTTGGTCCTACCCAACAGGCCTAAACCTCTTCAAATTTTCATGGCTGTGATGTTCCTCTACTTGCTCTTCACCACCTTCGAAATCGAAACCTCTCTTGGTTTCAGAACGAGGTTTGTGTCAGTGTCCTCATTGTTGGGGAATGAAGATCAACACCAACGTACCCATTCCAGCAAAGCCTCAAACTTTCCCTCACAAGGGGTGTTCCAAGGCTCACTGCATCGAAAAGCCTTGCAGGGTTTGCAGAAAGTTTCCACCTTGAGTTTCATCGAGGCTTTGAATGACACCACTGTGGAAGAAAACATGTTTTCTGAACTCCACAAGGCTGCTAGGCATGCTTGGGTTGAAGGGAAGAGGCTCTGGGAACAAGTTGAGAGTGTGAAAGAAACCATGAATGTGGCAAGGTTCAAGGCTGAGAACCTTTCTGATTCGTGTCAGCATTCAATTTCATTATCTGGGTCTGAATTGAGGAAGCAGAATAAAGGGGTCATGGTGATGGTGCTTCCTTGTGGTTTGACATTGGGGTCTCACGTGACTGTTGTGGGGACCCCACGTTGGGCTCACTGGGAGGACGATCCTAAGATATCTGTGGTGAAGGAAGAGGAGGGAAAGGTAATGGTGTCGCAGTTCATGATGGAGCTTCAGGGTTTGAAGAGTGTGGACAAGGAAGAGCCTCCTAGGATACTGCATTTCAATCCCAGGTTGAAGGGGGATTATAGTGGGAGGCCTGTGATTGAGCAGAACACTTGTTACAGGATGCAGTGGGGTTCTGCTCTCAGGTGTGAGGGATGGAAGTCCCGAGCTGACGAGGATACAGCTTCCTTACCCACATCACATCCAAGTTTTGCTCCACAGATGCATCTTGAATTGCTTCCTCAATGGAAAGCTCCACCTCTTGTACACGTGAATGTGGAGCTTTTCATTGGAATACTTTCTGCTGGCAACCATTTTGCTGAGCGGATGGCAGTAAGGAAATCATGGATGCAACATAAACTAATCAAATCTTCAAATGTCGTATCTCGGTTCTTTGTTGCCTTGCATGGAAGGAAAGATTTAAATATGGAGATAAAGAAAGAAGCAGATTATTTTGGCGATATTATTATAGTCCCCTACATGGATCATTATGACCTTGTTGTGTTGAAGACGATAGCTATCACTGAATATGGGATTCGCTCAGTGGCTGCCAAGTATATCATGAAGTGTGATGATGACACGTTTGTCAGAATAGAGTCTATCATCAGCGAAGCAAGAAAAGTAGGAAGTGGTAGAAGTCTCTATATAGGAAATATGAATTACCACCATAGGCCCCTACGTTCTGGCAAATGGGCAGTAACATATGAGGAATGGTCAGAGGAAGAGTATCCTACCTATGCTAATGGTCCAGGCTATACAATCTCTGCAGACATTGCCCAGTTCATTGTATCCAACTTCGAGGAGCACAGATTAAAATTATTTAAAATGGAGGATGTTAGCATGGGAATGTGGGTAGAGCAATTCAACAGTTCAAGGCCAGTTGAGTATGTGCACAGCTTCAAGTTCTGCCAATTTGGGTGCATTGAAGATTACTACACTGCACATTACCAATCTCCAAGACAAATGACCTGTATGTGGGACAAGTTGCAACAAAAGGGAAAGCCCCTATGTTGCAACATGAGATAACATAGTCTATGATCATAATATATTTATGTACATAGGCACTGAGGACCTTTATGACCTCCACATATTCATTCATTGTTTAACTAACCTCTTTTTTTTTTTCATTTCGATTCTCCCTAAAGTAGAAGGCCTAGGTGTATCATAAAATTGAATACTACAGCGATTGCTGAAGGAGCAAACCAATGGTTTGTGAGCTTGTAATGTAGAGAATGTAACTGAAGCCAAATGAAATGATATTTTCTGCATTGACTTTTTTTTTTTTCATGGCATAATTATTCAGTACTGAGTATAGATGTG

Coding sequences of Glyma18g16870

Limit To All Plant Sequences

>Glyma18g16870.1   sequence type=CDS   gene model=Glyma18g16870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGGGTGAAGAAGCTATACCCATTTTTGGTCCTACCCAACAGGCCTAAACCTCTTCAAATTTTCATGGCTGTGATGTTCCTCTACTTGCTCTTCACCACCTTCGAAATCGAAACCTCTCTTGGTTTCAGAACGAGGTTTGTGTCAGTGTCCTCATTGTTGGGGAATGAAGATCAACACCAACGTACCCATTCCAGCAAAGCCTCAAACTTTCCCTCACAAGGGGTGTTCCAAGGCTCACTGCATCGAAAAGCCTTGCAGGGTTTGCAGAAAGTTTCCACCTTGAGTTTCATCGAGGCTTTGAATGACACCACTGTGGAAGAAAACATGTTTTCTGAACTCCACAAGGCTGCTAGGCATGCTTGGGTTGAAGGGAAGAGGCTCTGGGAACAAGTTGAGAGTGTGAAAGAAACCATGAATGTGGCAAGGTTCAAGGCTGAGAACCTTTCTGATTCGTGTCAGCATTCAATTTCATTATCTGGGTCTGAATTGAGGAAGCAGAATAAAGGGGTCATGGTGATGGTGCTTCCTTGTGGTTTGACATTGGGGTCTCACGTGACTGTTGTGGGGACCCCACGTTGGGCTCACTGGGAGGACGATCCTAAGATATCTGTGGTGAAGGAAGAGGAGGGAAAGGTAATGGTGTCGCAGTTCATGATGGAGCTTCAGGGTTTGAAGAGTGTGGACAAGGAAGAGCCTCCTAGGATACTGCATTTCAATCCCAGGTTGAAGGGGGATTATAGTGGGAGGCCTGTGATTGAGCAGAACACTTGTTACAGGATGCAGTGGGGTTCTGCTCTCAGGTGTGAGGGATGGAAGTCCCGAGCTGACGAGGATACAGTTGATGGACAGGTGAAATGTGAAAAGTGGATTCGTGATGATGATAGCCATGCAGAAGAGGCAAAGGCAACATGGTGGTTAACCAGACTGATTGGGCGAACTAAGAAGGTTACTATAGATTGGCCATACCCTTTTGTAGAGGCTAGATTGTTTGTTCTCACCGTGAGTGCTGGCATGGAAGGCTACCATGTTAGTGTGGATGGAAGGCATGTGACATCTTTTCCCTATCGCACGGGATTTTCTCTTGAGGATTCAACTGGTCTATCCATAAAAGGGGATGTTGATGTGCACTCTATATATGCAGCTTCCTTACCCACATCACATCCAAGTTTTGCTCCACAGATGCATCTTGAATTGCTTCCTCAATGGAAAGCTCCACCTCTTGTACACGTGAATGTGGAGCTTTTCATTGGAATACTTTCTGCTGGCAACCATTTTGCTGAGCGGATGGCAGTAAGGAAATCATGGATGCAACATAAACTAATCAAATCTTCAAATGTCGTATCTCGGTTCTTTGTTGCCTTGCATGGAAGGAAAGATTTAAATATGGAGATAAAGAAAGAAGCAGATTATTTTGGCGATATTATTATAGTCCCCTACATGGATCATTATGACCTTGTTGTGTTGAAGACGATAGCTATCACTGAATATGGGATTCGCTCAGTGGCTGCCAAGTATATCATGAAGTGTGATGATGACACGTTTGTCAGAATAGAGTCTATCATCAGCGAAGCAAGAAAAGTAGGAAGTGGTAGAAGTCTCTATATAGGAAATATGAATTACCACCATAGGCCCCTACGTTCTGGCAAATGGGCAGTAACATATGAGGAATGGTCAGAGGAAGAGTATCCTACCTATGCTAATGGTCCAGGCTATACAATCTCTGCAGACATTGCCCAGTTCATTGTATCCAACTTCGAGGAGCACAGATTAAAATTATTTAAAATGGAGGATGTTAGCATGGGAATGTGGGTAGAGCAATTCAACAGTTCAAGGCCAGTTGAGTATGTGCACAGCTTCAAGTTCTGCCAATTTGGGTGCATTGAAGATTACTACACTGCACATTACCAATCTCCAAGACAAATGACCTGTATGTGGGACAAGTTGCAACAAAAGGGAAAGCCCCTATGTTGCAACATGAGATAA

>Glyma18g16870.2   sequence type=CDS   gene model=Glyma18g16870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGGGTGAAGAAGCTATACCCATTTTTGGTCCTACCCAACAGGCCTAAACCTCTTCAAATTTTCATGGCTGTGATGTTCCTCTACTTGCTCTTCACCACCTTCGAAATCGAAACCTCTCTTGGTTTCAGAACGAGGTTTGTGTCAGTGTCCTCATTGTTGGGGAATGAAGATCAACACCAACGTACCCATTCCAGCAAAGCCTCAAACTTTCCCTCACAAGGGGTGTTCCAAGGCTCACTGCATCGAAAAGCCTTGCAGGGTTTGCAGAAAGTTTCCACCTTGAGTTTCATCGAGGCTTTGAATGACACCACTGTGGAAGAAAACATGTTTTCTGAACTCCACAAGGCTGCTAGGCATGCTTGGGTTGAAGGGAAGAGGCTCTGGGAACAAGTTGAGAGTGTGAAAGAAACCATGAATGTGGCAAGGTTCAAGGCTGAGAACCTTTCTGATTCGTGTCAGCATTCAATTTCATTATCTGGGTCTGAATTGAGGAAGCAGAATAAAGGGGTCATGGTGATGGTGCTTCCTTGTGGTTTGACATTGGGGTCTCACGTGACTGTTGTGGGGACCCCACGTTGGGCTCACTGGGAGGACGATCCTAAGATATCTGTGGTGAAGGAAGAGGAGGGAAAGGTAATGGTGTCGCAGTTCATGATGGAGCTTCAGGGTTTGAAGAGTGTGGACAAGGAAGAGCCTCCTAGGATACTGCATTTCAATCCCAGGTTGAAGGGGGATTATAGTGGGAGGCCTGTGATTGAGCAGAACACTTGTTACAGGATGCAGTGGGGTTCTGCTCTCAGGTGTGAGGGATGGAAGTCCCGAGCTGACGAGGATACAGCTTCCTTACCCACATCACATCCAAGTTTTGCTCCACAGATGCATCTTGAATTGCTTCCTCAATGGAAAGCTCCACCTCTTGTACACGTGAATGTGGAGCTTTTCATTGGAATACTTTCTGCTGGCAACCATTTTGCTGAGCGGATGGCAGTAAGGAAATCATGGATGCAACATAAACTAATCAAATCTTCAAATGTCGTATCTCGGTTCTTTGTTGCCTTGCATGGAAGGAAAGATTTAAATATGGAGATAAAGAAAGAAGCAGATTATTTTGGCGATATTATTATAGTCCCCTACATGGATCATTATGACCTTGTTGTGTTGAAGACGATAGCTATCACTGAATATGGGATTCGCTCAGTGGCTGCCAAGTATATCATGAAGTGTGATGATGACACGTTTGTCAGAATAGAGTCTATCATCAGCGAAGCAAGAAAAGTAGGAAGTGGTAGAAGTCTCTATATAGGAAATATGAATTACCACCATAGGCCCCTACGTTCTGGCAAATGGGCAGTAACATATGAGGAATGGTCAGAGGAAGAGTATCCTACCTATGCTAATGGTCCAGGCTATACAATCTCTGCAGACATTGCCCAGTTCATTGTATCCAACTTCGAGGAGCACAGATTAAAATTATTTAAAATGGAGGATGTTAGCATGGGAATGTGGGTAGAGCAATTCAACAGTTCAAGGCCAGTTGAGTATGTGCACAGCTTCAAGTTCTGCCAATTTGGGTGCATTGAAGATTACTACACTGCACATTACCAATCTCCAAGACAAATGACCTGTATGTGGGACAAGTTGCAACAAAAGGGAAAGCCCCTATGTTGCAACATGAGATAA

Predicted protein sequences of Glyma18g16870

Limit To All Plant Sequences

>Glyma18g16870.1   sequence type=predicted peptide   gene model=Glyma18g16870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRVKKLYPFLVLPNRPKPLQIFMAVMFLYLLFTTFEIETSLGFRTRFVSVSSLLGNEDQHQRTHSSKASNFPSQGVFQGSLHRKALQGLQKVSTLSFIEALNDTTVEENMFSELHKAARHAWVEGKRLWEQVESVKETMNVARFKAENLSDSCQHSISLSGSELRKQNKGVMVMVLPCGLTLGSHVTVVGTPRWAHWEDDPKISVVKEEEGKVMVSQFMMELQGLKSVDKEEPPRILHFNPRLKGDYSGRPVIEQNTCYRMQWGSALRCEGWKSRADEDTVDGQVKCEKWIRDDDSHAEEAKATWWLTRLIGRTKKVTIDWPYPFVEARLFVLTVSAGMEGYHVSVDGRHVTSFPYRTGFSLEDSTGLSIKGDVDVHSIYAASLPTSHPSFAPQMHLELLPQWKAPPLVHVNVELFIGILSAGNHFAERMAVRKSWMQHKLIKSSNVVSRFFVALHGRKDLNMEIKKEADYFGDIIIVPYMDHYDLVVLKTIAITEYGIRSVAAKYIMKCDDDTFVRIESIISEARKVGSGRSLYIGNMNYHHRPLRSGKWAVTYEEWSEEEYPTYANGPGYTISADIAQFIVSNFEEHRLKLFKMEDVSMGMWVEQFNSSRPVEYVHSFKFCQFGCIEDYYTAHYQSPRQMTCMWDKLQQKGKPLCCNMR*

>Glyma18g16870.2   sequence type=predicted peptide   gene model=Glyma18g16870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRVKKLYPFLVLPNRPKPLQIFMAVMFLYLLFTTFEIETSLGFRTRFVSVSSLLGNEDQHQRTHSSKASNFPSQGVFQGSLHRKALQGLQKVSTLSFIEALNDTTVEENMFSELHKAARHAWVEGKRLWEQVESVKETMNVARFKAENLSDSCQHSISLSGSELRKQNKGVMVMVLPCGLTLGSHVTVVGTPRWAHWEDDPKISVVKEEEGKVMVSQFMMELQGLKSVDKEEPPRILHFNPRLKGDYSGRPVIEQNTCYRMQWGSALRCEGWKSRADEDTASLPTSHPSFAPQMHLELLPQWKAPPLVHVNVELFIGILSAGNHFAERMAVRKSWMQHKLIKSSNVVSRFFVALHGRKDLNMEIKKEADYFGDIIIVPYMDHYDLVVLKTIAITEYGIRSVAAKYIMKCDDDTFVRIESIISEARKVGSGRSLYIGNMNYHHRPLRSGKWAVTYEEWSEEEYPTYANGPGYTISADIAQFIVSNFEEHRLKLFKMEDVSMGMWVEQFNSSRPVEYVHSFKFCQFGCIEDYYTAHYQSPRQMTCMWDKLQQKGKPLCCNMR*

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