Glyma18g16861 - SoyBase

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Report for Sequence Feature Glyma18g16861

Feature Type:	gene_model
Chromosome:	Gm18
Start:	17548598
stop:	17550295
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g16861

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05670	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR-like) superfamily protein \| chr1:1698574-1700799 REVERSE LENGTH=741	SoyBase	E_val: 0	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7LAK1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tau class glutathione S-transferase n=1 Tax=Medicago truncatula RepID=G7LAK1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023386B7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023386B7 related cluster n=1 Tax=unknown RepID=UPI00023386B7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g16861

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g16861 not represented in the dataset	Glyma18g16861 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g16861

Paralog	Evidence	Comments
Glyma08g40580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g16861 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g128500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g16861

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g16861

Limit To All Plant Sequences

>Glyma18g16861.1   sequence type=CDS   gene model=Glyma18g16861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCACAGGCTGGTTTTCGAGTTCTGGGAAAAGTCCCATTTGGACGTTGGAAACTCTTTTGATCGATTTACTGAGAGGTTGATTTATACTTACAAGGACTGGGGTGCACATCCCCGTGTGTTTGATGTGTTCTTCCTAGTTCTTGTTGAGGCAGGGTTGCTTCTAGAAGCTGGGAAACTGTTTGATAAGTTGTTAAATTACGGTGTTCTTGTCTCTGTAGATTCTTGTAATTTGTTTCTAGCTAGGCTATCTAACAGTTTTGATGGGATAAAGACGGGAATTAGGGTGTTCAGAGAGTATCCAGAAGTGGGTGTTTGTTGGAACACTGTGTCGTATAACATTATTCTTCATTCGCTTTGTCAATTGGGAAGGGTAAAAGAAGCACATAATCTGGTAATACAGATGGAGTTTAGGGGGAATGTTCTGGATGTTGTTAGTTATAGCATTATAATTGATGGATATTGTCAGGTTGAAGGAAAGGTCTTGAAGCTCATGGAAGAGTTGCAGAGAAAGGGATTGAAACCGAATCAATACACGTACATTAGCATAATTTCTCTTCTTTGTAAGACTGGTAGAGTAGTTGAAGCAGGGCAGGTCTTGAGGGAGATGAAAAATCAGAGGATTTTTCCTGATAATGTGGTGTATACAACTCTCATCAGTGGTTTTGGCAAGTCTGGGAATGTTTCAGCTGAATACAAACTCTTTGATGAAATGAAGAGGTTGGAACCAGACGAAGTTACTTATACTGCTCTTATTGACGGGTATTGCAAGGCCAGGAAAATGAAAGAGGCATTCTCTCTTCACAACCAGATGGTTGAGAAGGGTCTGACTCCTAATGTTGTCACTTATACTGCATTAGTTGATGGCCTGTGTAAACGTGGAGAGGTAGATATAGCAAATGAGCTTCTTCATGAAATGTCTGAAAAGGGCCTTCAACCGAATGTCTGCACATATAATGCATTGATCAATGGTCTCTGTAAGGTAGGAAATATAGAGCAAGCTGTAAAACTTATGGAAGAAATGGATCTGGCAGGGTTTTATCCTGACACTATTACATATACTACACTCATGGATGCTTATTGTAAGATGGGTGAAATGGCCAAGGCTCATGAATTGCTGCGGATTATGCTTGATAAAGGACTTCAACCTACAATTGTTACATTCAATGTGCTAATGAATGGGCTTTGCATGTCAGGGATGTTGGAAGATGGTGAAAGACTAATCAAATGGATGTTGGACAAAGGTATAATGCCAAATGCAACAACATTCAATTCTCTTATGAAGCAGCACTGTATTAGAAATAACATGTGTGCCACTACTGAGATTTATATGAGGATGTGTGCTCAAGGAGTGATGCCTGACTGTAATACCTATAATATTTTGATTAAAGGGCATTGTAAAGCTAGAAATATGAAAGAGGCATGGTTCTTGCATAAAGATATAGTTGAAAAGGGATTTAGTCTAACTGATGCTTCCTATAATGCTCTTATAAAGGGTTTCTATAAGAGGAAGAAATTTGTGGAGGCTAGGAAGCTATTTGAGGAGATGAGAACATGGGTTCATTGCAGAAAAAGAGATATATGA

Predicted protein sequences of Glyma18g16861

Limit To All Plant Sequences

>Glyma18g16861.1   sequence type=predicted peptide   gene model=Glyma18g16861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHRLVFEFWEKSHLDVGNSFDRFTERLIYTYKDWGAHPRVFDVFFLVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIKTGIRVFREYPEVGVCWNTVSYNIILHSLCQLGRVKEAHNLVIQMEFRGNVLDVVSYSIIIDGYCQVEGKVLKLMEELQRKGLKPNQYTYISIISLLCKTGRVVEAGQVLREMKNQRIFPDNVVYTTLISGFGKSGNVSAEYKLFDEMKRLEPDEVTYTALIDGYCKARKMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKRGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGLCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQHCIRNNMCATTEIYMRMCAQGVMPDCNTYNILIKGHCKARNMKEAWFLHKDIVEKGFSLTDASYNALIKGFYKRKKFVEARKLFEEMRTWVHCRKRDI*

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