Glyma18g16850 - SoyBase

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Report for Sequence Feature Glyma18g16850

Feature Type:	gene_model
Chromosome:	Gm18
Start:	17537879
stop:	17545969
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g16850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10370	AT	Annotation by Michelle Graham. TAIR10: Glutathione S-transferase family protein \| chr1:3397274-3398273 REVERSE LENGTH=227	SoyBase	E_val: 2.00E-78	ISS
GO:0006749	GO-bp	Annotation by Michelle Graham. GO Biological Process: glutathione metabolic process	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009704	GO-bp	Annotation by Michelle Graham. GO Biological Process: de-etiolation	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0060416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to growth hormone stimulus	SoyBase	N/A	ISS
GO:0080148	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of response to water deprivation	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004364	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity	SoyBase	N/A	ISS
KOG0406	KOG	Glutathione S-transferase	JGI		ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF16	Panther	GLUTATHIONE S-TRANSFERASE THETA	JGI		ISS
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI		ISS
PF02798	PFAM	Glutathione S-transferase, N-terminal domain	JGI		ISS
UniRef100_F2YRN9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase n=1 Tax=Populus alba x Populus tremula var. glandulosa RepID=F2YRN9_9ROSI	SoyBase	E_val: 9.00E-87	ISS
UniRef100_I1N1A6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N1A6_SOYBN	SoyBase	E_val: 2.00E-161	ISS

Expression Patterns of Glyma18g16850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g16850 not represented in the dataset	Glyma18g16850 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g16850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g16850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g16850

Limit To All Plant Sequences

>Glyma18g16850.1   sequence type=CDS   gene model=Glyma18g16850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCAAACCGAGTGAGGTCAAGTTGTTGGGGGCATCGCCAAGTCCATTTGTGTTGATGGCTCGCATAGCTCTAAACAACAAATCAGTGGAGTATGAATTCATTGAGGAAAGGTTGGAGTCCAAAAGTCAGCTTCTCCTTCAATCCAACCCCATTTACAAGAAAATCCCTGTTCTCATTCACAGGGACAAAACCCATAGTGAGTTTTTCATCATTGTGCAGTATGTGGATGATGTTTGGTCCTCTGCCTCTCCCATTGTCCCCTCTAATCCTTATGACCACGCCGTTGCTTGTTTCTGGGCTGCTGCTTATATTGATGAAAAGTGGTACCCGACCATGAGATCCATTAGAGGAGCCAAAGGAAAGGATGATAAGAAGAGATTCATAGAGGAAGTGAGACAAGGATTGGCACTATTGAAGGATGTATTTAAAAGTAGCAGCAAAGGCATGGCCTTTTATGGTGGCAACCAAATTGGTTTCTTGGACATTGCACTTGGTAGCTTCTTAGGGTGGCTGAGGGTGACAGAGATATCCAATGGGGTGAAGTTGCTTGACCAAAGCAACACACCTGAGTTGGTGAAATGTGATGAAAGGTTTTGTGCACATGGTGTTGTCAAAGATGTTATGCCAGAGATATGGAAGGTTGTTGAGTTTGCCAAGACACTAAAATGCTAG

Predicted protein sequences of Glyma18g16850

Limit To All Plant Sequences

>Glyma18g16850.1   sequence type=predicted peptide   gene model=Glyma18g16850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKPSEVKLLGASPSPFVLMARIALNNKSVEYEFIEERLESKSQLLLQSNPIYKKIPVLIHRDKTHSEFFIIVQYVDDVWSSASPIVPSNPYDHAVACFWAAAYIDEKWYPTMRSIRGAKGKDDKKRFIEEVRQGLALLKDVFKSSSKGMAFYGGNQIGFLDIALGSFLGWLRVTEISNGVKLLDQSNTPELVKCDERFCAHGVVKDVMPEIWKVVEFAKTLKC*

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